Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02709 ATGGAAGAAGGAACTTCCGATAACGATAGACACAAAATCCGCAACATATGCATCCTAGCACACGTAGACCACGGCAAAACAACGCTGGCGGACCAACTCATCGCAACCGCCGGCGGCGGCATGGTTCATCCAAAAGTAGCCGGACGAGTCCGCTTCATGGATTACCTCGACGAAGAACAGCGTCGAGCCATAACAATGAAGAGTTCTTCAATTTCCCTTCACTATAATCACTACACCGTTAACCTAATTGATTCCCCTGGACACATCGATTTCTGCGGCGAGGTTTCCACGGCGGCGCGTCTCTCCGACGGTGCACTTCTATTAGTTGACGCTGTTGAAGGTGTTCATATTCAAACTCACGCTGTTCTTCGTCAATGCTGGATCGAACGTCTTTCCCCTTGTCTTGTTCTTAATAAGATTGATAGGTTAATCACTGAATTGAAACTTACACCTTTTGAAGCTTATACACGTTTGTTGAGGATTGTTCATGAGGTTAATGGTATTGTTAGTGCTTATAACTCGCAGAAATATCTTTCAGATGTTGATTCTCTTCTCGCTGGCGGGACTGCCGCTGGTGGTGAGGTTATGGAGGATTATGATGATGTTGAAGATGTTTTTCAGCCTCAGAAAGGGAATGTAGTTTTTGCTTGTGCTTTAGATGGTTGGGGTTTTGGAATTCATGAATTTGCTGAAATTTATGCTTCAAAGCTTGGGGCTAGTGTTAGTGCATTACAGAAGGCTTTGTGGGGTCCACGGTATTTTAATCCGAAGACGAAGATGATTGTTGGGAAAAAAGGGATTGGTGGTGGTGGGAAGGCTAAACCTATGTTTGTTCAGTTTGTGTTGGAGCCTTTGTGGCAGGTTTATCAGGGTGCACTTGAAGGTGATAAAGGGTTAATTGAGAAGGTTATTAGGTCTTTTAATTTGCAGGTTCCGGCGCGAGAGTTGATGAATAAGGATGCTAAGGTTGTGCTTCAATCTGTTATGAGCCGTTGGCTTCCACTTTCGGATGCTATTTTGTCGATGGTGGTTAAGTGTTTGCCTGATCCTGTGGCTGCACAGGGTTCTCGGATATCACGGTTGATTCCGCAGTGTGAGGTTACTGCTGAGAATGAGATTGATAAGAGGGTGGTGGAAGAGGCTGAGGTTGTGAGGAGGTCGGTGGAAAGGTGTGATTGGAGGGATGAGGCTCCTTGTGTTGCGTTTGTGGCGAAGATGTTTGCACTTCCTGTTAGAATGCTTCCTCCTCCTCAAGTGGGGGAGGTTGTAGGGAGTTTTGGTGAGGAAGGAGATGGTGAATCTGATGAGTGTTTTTTGGCATTTGCTAGGATATTTAGTGGTGTTTTGTCGGTTGGACAGAGAGTTTTTGTGCTTTCTGCTTTGTATGATCCATTGAAGGGGGAATCGATGCAAAAACATATTCAGGAAGCTGAATTGAAATCCATGTATTTGATGATGGGACAAGGGTTGAAAGTAGTGAAATCTGCGAAAGCAGGAGATGTTGTCGCTATCCGAGGCCTTGGTCAGCATATATTAAAAAGTGCAACCCTTTCTTCAACCAGGAACTGTTGGCCTTTTTCGAGTATGGCATTTCAAGTTGCACCGATTTTGAGGGTTGCAATTGAGCCATCTGACCCTGCAGATATGGGTTCACTGCTCAAAGGCTTGAGGCTTTTGAATCGAGCAGATCCGTTTGTTGAGGTCACGGTTTCTGCTAGAGGAGAGCACGTTCTTGCTGCGGCTGGTGAAGTTCATCTTGAGAGATGCATAAAGGATTTGAAGGACAGGTTTGCTAAAGTAAGCTTGGAGGTTTCTCCACCCCTTGTGTCCTACAAAGAGACCATTGAAGGAGAGGTATCCAACATGTTGGAAAAATTGAAAATTCTTAGCAGGAACTTAGATTATGTCGAGAAAACGACACCCAATGGAAGATGTGTTGTACGAGTGCAGGTAATGAAACTTCTACCTTCTTTGACAAAGGTGCTCGACGAAAGCGCTGATTTACTTGGAGATATCGTTGGAGTAAATTCAGCGCAGACAGTTAAAAGTTTAGAAACTCAGAGAACAAATATTCTTGAAGAAAATGAGAATCCGGCTGAAGTGCTTAAAAAACGTATAATGGATGCCATCGAGAGCGATGTCTTGGATAGGAATGAGAATGATGAAGACCATGCTGAGAAATGTAGATTGAAGTGGTTAAAGCTTTTGAGGAGGATATGGGCACTTGGACCAAGCTACATCGGTGCTAACGTTCTCTTCACTCCTGATATTAAAGCCGAAAGTACCGATGGCTCTGTTCTAATACGTGGTTCTTCTCAACTATCTGAAAAATTGGGTTTCATGGCTGATTCCAGTGGCAGTAACTTGGTTGCAGATACATCTTCAAATGAGAGCCAAGTGTTGTACATGGATGCTGCACGTCTCGAAAGTAATGTTATAACTGGGTTTCAACTAGCCACTTCAGCTGGACCTTTATGTGATGAACCTATGTGGGGTTTAGCATTTGTGATCGAGGCACGCATAACTCCATCTTCAGGGCAATATGATGAATTTGAAACGCACCAACAATCTGACCAGTATGGCATCTTTGCAGGGCAGGTTATTGCAACTGTCAAAGATGCTTGTAGGGCAGCTGTGCTAAAGAATAAACCAAGGCTTGTGGAAGCAATGTACTTTTGTGAATTGAATACTCCTACTGAGTATTTAGGTCCCATGTATGGTGTACTTTCTCGAAGACGAGCTCGGATTTTGAAGGAAGAGATGCAGGAAGGTTCGCCTTTCTTCACTGTGCATGCATATGTTCCTGTTTCTGAGAGCTTTGGTTTTACTGATGAGCTTAGAAGTCGGACTTCTGGTGCTGCAAGTGCACTACTTGTGCTAAGCCATTGGGAAGCACTACTTGAGGATCCTTTTTTTGTACCTAAAACAGAAGAAGAAATTGAAGAGTTTGGAGATGGTTCCAGTGTTCTTCCAAATACAGCAAGAAAGTTGATTGACACAGTCAGACGGCGCAAGGGTCTTCCTGTGGAGGAAAAGGTAGTACAACATGGAACAAAGCAAAGGACACTCGCTCGCAAAGTTTGA 3084 0.4413 MEEGTSDNDRHKIRNICILAHVDHGKTTLADQLIATAGGGMVHPKVAGRVRFMDYLDEEQRRAITMKSSSISLHYNHYTVNLIDSPGHIDFCGEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLSPCLVLNKIDRLITELKLTPFEAYTRLLRIVHEVNGIVSAYNSQKYLSDVDSLLAGGTAAGGEVMEDYDDVEDVFQPQKGNVVFACALDGWGFGIHEFAEIYASKLGASVSALQKALWGPRYFNPKTKMIVGKKGIGGGGKAKPMFVQFVLEPLWQVYQGALEGDKGLIEKVIRSFNLQVPARELMNKDAKVVLQSVMSRWLPLSDAILSMVVKCLPDPVAAQGSRISRLIPQCEVTAENEIDKRVVEEAEVVRRSVERCDWRDEAPCVAFVAKMFALPVRMLPPPQVGEVVGSFGEEGDGESDECFLAFARIFSGVLSVGQRVFVLSALYDPLKGESMQKHIQEAELKSMYLMMGQGLKVVKSAKAGDVVAIRGLGQHILKSATLSSTRNCWPFSSMAFQVAPILRVAIEPSDPADMGSLLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKDRFAKVSLEVSPPLVSYKETIEGEVSNMLEKLKILSRNLDYVEKTTPNGRCVVRVQVMKLLPSLTKVLDESADLLGDIVGVNSAQTVKSLETQRTNILEENENPAEVLKKRIMDAIESDVLDRNENDEDHAEKCRLKWLKLLRRIWALGPSYIGANVLFTPDIKAESTDGSVLIRGSSQLSEKLGFMADSSGSNLVADTSSNESQVLYMDAARLESNVITGFQLATSAGPLCDEPMWGLAFVIEARITPSSGQYDEFETHQQSDQYGIFAGQVIATVKDACRAAVLKNKPRLVEAMYFCELNTPTEYLGPMYGVLSRRRARILKEEMQEGSPFFTVHAYVPVSESFGFTDELRSRTSGAASALLVLSHWEALLEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDTVRRRKGLPVEEKVVQHGTKQRTLARKV 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02709 1027 Coils Coil 612 632 - -
Car04g02709 1027 Gene3D - 632 882 IPR014721 -
Car04g02709 1027 CDD eEF2_snRNP_like_C 888 966 - -
Car04g02709 1027 Gene3D - 5 207 IPR027417 -
Car04g02709 1027 Coils Coil 1026 1027 - -
Car04g02709 1027 Gene3D Translation factors 350 532 - -
Car04g02709 1027 Pfam Elongation factor G C-terminus 886 966 IPR000640 -
Car04g02709 1027 Pfam Elongation factor Tu GTP binding domain 12 348 IPR000795 GO:0003924|GO:0005525
Car04g02709 1027 SUPERFAMILY Translation proteins 389 529 IPR009000 -
Car04g02709 1027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 348 IPR027417 -
Car04g02709 1027 SUPERFAMILY Ribosomal protein S5 domain 2-like 609 887 IPR020568 -
Car04g02709 1027 CDD aeEF2_snRNP_like_IV 606 892 - -
Car04g02709 1027 Gene3D Yeast translation eEF2 (G' domain) 226 333 - -
Car04g02709 1027 Pfam Elongation factor Tu domain 2 439 517 IPR004161 GO:0005525
Car04g02709 1027 CDD EF2_snRNP_III 535 606 - -
Car04g02709 1027 Gene3D Elongation Factor G (Translational Gtpase), domain 3 534 610 - -
Car04g02709 1027 Gene3D - 884 1018 - -
Car04g02709 1027 CDD EF2 14 234 - -
Car04g02709 1027 SUPERFAMILY EF-G C-terminal domain-like 533 607 IPR035647 -
Car04g02709 1027 TIGRFAM small_GTP: small GTP-binding protein domain 12 143 IPR005225 GO:0005525
Car04g02709 1027 PRINTS GTP-binding elongation factor signature 15 28 IPR000795 GO:0003924|GO:0005525
Car04g02709 1027 PRINTS GTP-binding elongation factor signature 61 69 IPR000795 GO:0003924|GO:0005525
Car04g02709 1027 PRINTS GTP-binding elongation factor signature 81 91 IPR000795 GO:0003924|GO:0005525
Car04g02709 1027 PRINTS GTP-binding elongation factor signature 97 108 IPR000795 GO:0003924|GO:0005525
Car04g02709 1027 PRINTS GTP-binding elongation factor signature 133 142 IPR000795 GO:0003924|GO:0005525
Car04g02709 1027 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 11 241 IPR000795 GO:0003924|GO:0005525
Car04g02709 1027 SUPERFAMILY EF-G C-terminal domain-like 888 986 IPR035647 -
Car04g02709 1027 SMART EFG_C_a 885 974 IPR000640 -
Car04g02709 1027 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 8 1026 - -
Car04g02709 1027 CDD EF2_II 398 520 - -
Car04g02709 1027 PANTHER ELONGATION FACTOR-LIKE GTPASE 1 8 1026 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02709 Car-Chr4 52349647 52353248 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02709 7 1027 Eukaryotic Initiation Factors Gene Family AT3G22980 68.477 0.0 1431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02709 K14536 - pvu:PHAVU_003G003900g 1639.78