Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02708 atgtataGTGTGATCATAGTTCCTTCAAGATCAGTTTCTCATCAATTAAGTTTTAACCTACAAAGGAAAAAATCAAAGAAAAAGGAAGCTAGGGTTTTAATTTGTGAAATGGGGCGTGGAAAGATAGAGATAAAGAGGATTCAAAACACAACAACAAGGCAAGTTACTTTCTCAAAAAGAAGAACAGGACTAATCAAGAAGACTCATGAGCTTTCTGTTTTATGTGATGCACAAATTGGACTCATCATATTCTCAAGCACTGGAAAACTCTTCCAATATTCTTCTGAACCCTATAGGATGGATCAAATCATAGAAAAGTACCAGAGATCTACTGGGAAACGCATTATGGTGGAAAGTGATCATCACTATAGGGAAGAAATGTTCCATGACATGGCAATGCTGAGGCAAGAAAGTATTCGTGTTGAATTGGGAATTCAACGATATCTTGGAAGTGATATGAATGGTTTAAAGTATGATGATTTGACTAAACTTGAAGAGGAATTAGAATTCTCTCTTGCAAAAGTTCGAAACCGTCAGAATGAGCTATTGAGTCAACAAATGGAGAATCTGCGAAGGAAGGAAAGAATATTGGAAGATGAACACATCAATTTGTCGAACTGGGAGCAAAGGGCAGTGATGGAATTTCACAAGGCAGCAATAGAAGCAAACAAACAACAACAAAATGGAATGGATGAGTTTGCATTCTTTGAGGATCAACCAGCTGGTACCATTCTTCAACTTGCTGCCCCTGTTCTTCCACTTCACCTTCATCCTTATCTTCAGCTTGCTCAGCCAAATATTCATCAAGATTCTCTCCCTTCTAGGGACCCCAAACCATAA 840 0.3786 MYSVIIVPSRSVSHQLSFNLQRKKSKKKEARVLICEMGRGKIEIKRIQNTTTRQVTFSKRRTGLIKKTHELSVLCDAQIGLIIFSSTGKLFQYSSEPYRMDQIIEKYQRSTGKRIMVESDHHYREEMFHDMAMLRQESIRVELGIQRYLGSDMNGLKYDDLTKLEEELEFSLAKVRNRQNELLSQQMENLRRKERILEDEHINLSNWEQRAVMEFHKAAIEANKQQQNGMDEFAFFEDQPAGTILQLAAPVLPLHLHPYLQLAQPNIHQDSLPSRDPKP 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02708 279 PANTHER MADS-BOX TRANSCRIPTION FACTOR 37 254 IPR031050 GO:0005634|GO:0048316
Car04g02708 279 SMART madsneu2 37 96 IPR002100 GO:0003677|GO:0046983
Car04g02708 279 ProSiteProfiles MADS-box domain profile. 37 97 IPR002100 GO:0003677|GO:0046983
Car04g02708 279 ProSiteProfiles K-box domain profile. 124 218 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car04g02708 279 PRINTS MADS domain signature 59 74 IPR002100 GO:0003677|GO:0046983
Car04g02708 279 PRINTS MADS domain signature 74 95 IPR002100 GO:0003677|GO:0046983
Car04g02708 279 PRINTS MADS domain signature 39 59 IPR002100 GO:0003677|GO:0046983
Car04g02708 279 Coils Coil 161 210 - -
Car04g02708 279 CDD MADS_MEF2_like 38 114 IPR033896 GO:0000977|GO:0045944
Car04g02708 279 Pfam K-box region 119 205 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car04g02708 279 ProSitePatterns MADS-box domain signature. 39 93 IPR002100 GO:0003677|GO:0046983
Car04g02708 279 SUPERFAMILY SRF-like 38 118 IPR036879 GO:0003677|GO:0046983
Car04g02708 279 PANTHER MADS BOX PROTEIN 37 254 - -
Car04g02708 279 Gene3D - 50 129 IPR036879 GO:0003677|GO:0046983
Car04g02708 279 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 46 93 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02708 Car-Chr4 52293420 52296884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02708 36 276 MADS-box Gene Family AT5G23260 46.124 3.08e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car04g02708 K-box 1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02708 - - gmx:100783876 300.056