Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02690 ATGGCTGGTGTAAGGGAACAAGACCAATACATGCCAATAGCAAATGTGATAAGAATCATGCGACGGATTCTTCCGTCGCATGCAAAAATCTCTGACGACGCAAAAGAGACTATTCAAGAATGCGTTTCCGAGTACATAAGCTTCATAACTTCCGAAGCGAACGAGCGATGTCAAAGAGAACAAAGGAAAACGGTTACAGCTGAAGATTTACTTTGGGCGATGGGGAAACTAGGTTTCGACGATTATGTTCAACCTTTAACATTTTACCTTCAACGCTATCGCGAAAGCGAAGGTGAACCTGCTTCTGTTCGACGCACTTCCGCACTTGCTATGCCTCCTCCTCAAATTCAGAATGCTTCTTTTTCATCAATTCCAATTCCAaataataataataataattgttattcttatggttatggttttgattttgATAACCAAGGGTTTTATAGAGATGATGCTGGTGGTGGTGCTACTTCTTCTAATTCTGGTGGTGCTTTTATACCTAACTTTGATTATTGTTTTCCAAATCTTAAACGTGATAATTAA 546 0.3736 MAGVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITSEANERCQREQRKTVTAEDLLWAMGKLGFDDYVQPLTFYLQRYRESEGEPASVRRTSALAMPPPQIQNASFSSIPIPNNNNNNCYSYGYGFDFDNQGFYRDDAGGGATSSNSGGAFIPNFDYCFPNLKRDN 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02690 181 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 127 - -
Car04g02690 181 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Car04g02690 181 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Car04g02690 181 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Car04g02690 181 Gene3D Histone, subunit A 2 119 IPR009072 GO:0046982
Car04g02690 181 SUPERFAMILY Histone-fold 7 103 IPR009072 GO:0046982
Car04g02690 181 ProSitePatterns NF-YB/HAP3 subunit signature. 41 57 IPR003956 GO:0005634|GO:0006355|GO:0043565
Car04g02690 181 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Car04g02690 181 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 127 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02690 Car-Chr4 51815815 51817357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02690 4 127 CCAAT-HAP3 Transcription Factor Family AT5G47670 68.702 7.57e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Car04g02690 CBFD_NFYB_HMF 8.5e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02690 K08065 - gmx:100811633 218.009