Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02672 ATGGAAGCAACTTCAACATGCTTCTTCTGTGGTAGAATTCCATCAAAATCGAAACTTTCTTCATCTTCTTCATTTGGCTCATTTTGTTTATTAACAAAAAACAATGTTAACACAATCATGTGCACACGTTCATTCAAAACAACACCTCACAATCGTGTCATTCAAAACGTTAACGAAACAAAGCTTCCGAGTAGTAACACaaaaagaaggagaagaagaagaacaagaaatggtgtaggagtggaagaacaacaagaacaaAGGGAAATTGAAACACCCTTTGAGAATATGAACAAGAGGAGTGTTGTTGATGTGAATGTTAATGGTGACCCAATTGGCTGGAAAGATGTTGGAAAAAGTGTTGTTTGTTGGATTCGTGAGAGTATGAAATCGATGGCTTTTGATTTTGCTTCTGCTGAGTTACAAGGGGATAATGATTTTTTTGAGATGAAGCAAAAAATGGGACCTGGTCTTACTTTTGTTATTCAAGCTCAACCTTATTTGAATGCTGTTCCTATGCCACTTGGACTTGAAGTTATGTGTTTGAAGGCTTGTACTCATTATCCTACTCTCTTTGATCATTTTCAAAGAGAGTTGCGTGATGTTCTTCAAGATATGGAGAGTAAATTGTTGGTTCAAGATTGGCGTGAAACTCAGTCTTGGAAATTGCTTAAGGAACTTGCTAATTCAGCTCAGCATAGGGCAGTTGCAAGGAAGATAACACAGCCCAAAATTGTACAAGGAGTTTTAGGAATGGACATAGAAAGAGTCAAAGTGATACAGCATAGGATTGATGAATTCACCAACAACATGTCAGAACTTCTCAATATTGAAAGGGATGTTGAATTGGAGTTTACTCAAGAGGAATTGGATGCTGTGCCTAAACCAGATGACACTTCTGATCCATCGAAACCGATCGAGTTCTTGGTTAGTCATAGCCAGCCTCAGCAAGAACTTTGTGATACCATTTGTAACTTACAGGCCATCAGTACCTCTACAGGATTGGGGGGAATGCATTTGGTGTTATTCAAGATTGAAGGAAACCACCGATTACCACCAACTACTCTTTCGCCCGGAGAAATGGTTTGTGTGAGAACGTGTGACAGCAAGGGTGCAGTTACAACTTCTTGCATGCAAGGAGTTGTAGACAATCTTGGAGATGATGGATATAGTATTACTGTTGCTTTAGAGTTACGCCATGGCGATCCTACATTCTCTAAACTGTTCGGGAAGAATGTGCGCATCGATCGTATTCAAGGACTGGCTGATACACTTACCTATGAGCGCAATTGTGAAGCTCTAATGCTGCTTCAGAAGAATGGTTTACGAAAGAAAAATCCATCAATTTCCGTTGTTGCTACACTCTTTGGAGATGGTGAAGATATTGCATGGCTTGAGAAGAATGATTTGGCCGACTTTGCAGAAGAAAAAACGAATGAAACCTTAGGAAGTGAATCCTATGATAAAACTCAGCAGAGAGCAATTGCATTGGGGTTGAATAAGAAGAGGCCATTATTGGTTATCCAAGGACCTCCTGGTACAGGCAAAACCGGTTTACTCAAGCAACTTATAGCATGCGCTGTCGAGCAAGGCGAAAGAGTTCTTGTTACAGCACCTACTAATGCAGCTGTCGATAACATGGTTGAAAAGCTTTCAAATGTTGGATTAAATATCGTTCGAGTTGGAAATCCAGCCCGAATATCAAAAACAGTAGGATCGAAGTCTTTAGGAGAAATTGTGAATGCGAAGCTTGCAAGTTTTCGCGAAGAGTATGAGAGAAAAAAGTCTGATCTAAGGAAAGATCTAAGGCATTGTTTAAAGGATGATTCATTAGCTGCAGGCATACGTCAACTTCTGAAACAGTTGGCAAGGTCTCTAAAGAAAAAGGAAAAGCAGACGATAAATGAAGTTCTATCGAGTGCTCAAGTTGTGCTTGCCACCAATACAGGAGCAGCTGATCCTTTGATTCGAAGGCTGGATGCTTTTGACTTAGTTGTCATAGATGAAGCTGGACAGGCAATTGAACCGTCTTGCTGGATTCCTATATTGCAGGCGAAACGATGTATTCTTGCTGGTGATCAATGCCAACTAGCTCCTGTTATATTTTCTAGAAAGGCGTTAGAAAGCGGTCTTGGAATATCGCTACTGGAGAGAGCTGCAACTCTGCATGAAGGAGTTCTCACTACAAGATTAACAACACAATACCGTATGAATGATGCCATTGCAAGTTGGGCTTCAAAGGAGATGTATGGAGGATTGTTGAAGTCTTCTAAGAGTGTCTTTTCTCATCTTCTTGTAGACTCTCCTTTTGTTAAGCCTACATGGATAACACAATGCCCTCTGCTATTGCTCGACACTCGAATGCCGTATGGAAGTCTATCCGTTGGTTGTGAAGAGCATCTAGATCCAGCCGGAACAGGCTCATTGTATAACGAAGGAGAAGCTGATATAGTCTTGCAGCATGTATTTTCCTTAATTTATTCTGGTGTTAACCCAGCTGCTATTGTAGTTCAATCCCCTTATGTTGCTCAAGTTCAACTTTTGAGGGACATGCTTGATGGGTTTCCAGAAGCAGCCGGTACCGAAGTTTCTACAATCGATAGTTTTCAAGGTCGGGAAGCCGATGCTGTAATTTTATCAATGGTACGATCAAACACATTGGGAGCCGTTGGATTCCTTGGTGATAGCAGAAGAATCAATGTTGCCATCACAAGAGCGAGAAAACATTTAGCTGTAGTTTGTGACAGCTCAACTATATGCCATAATACGTTCCTAGCAAGACTTATGCGCCATATTCGACACTTTGGTAGGGTGAAGCATGTTGAACCAGATAGTTTTGGAGGAGGGTTTGGACTTGGGATGAATCCAATATTACCTTCTATTGATTAG 2889 0.4001 MEATSTCFFCGRIPSKSKLSSSSSFGSFCLLTKNNVNTIMCTRSFKTTPHNRVIQNVNETKLPSSNTKRRRRRRTRNGVGVEEQQEQREIETPFENMNKRSVVDVNVNGDPIGWKDVGKSVVCWIRESMKSMAFDFASAELQGDNDFFEMKQKMGPGLTFVIQAQPYLNAVPMPLGLEVMCLKACTHYPTLFDHFQRELRDVLQDMESKLLVQDWRETQSWKLLKELANSAQHRAVARKITQPKIVQGVLGMDIERVKVIQHRIDEFTNNMSELLNIERDVELEFTQEELDAVPKPDDTSDPSKPIEFLVSHSQPQQELCDTICNLQAISTSTGLGGMHLVLFKIEGNHRLPPTTLSPGEMVCVRTCDSKGAVTTSCMQGVVDNLGDDGYSITVALELRHGDPTFSKLFGKNVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSISVVATLFGDGEDIAWLEKNDLADFAEEKTNETLGSESYDKTQQRAIALGLNKKRPLLVIQGPPGTGKTGLLKQLIACAVEQGERVLVTAPTNAAVDNMVEKLSNVGLNIVRVGNPARISKTVGSKSLGEIVNAKLASFREEYERKKSDLRKDLRHCLKDDSLAAGIRQLLKQLARSLKKKEKQTINEVLSSAQVVLATNTGAADPLIRRLDAFDLVVIDEAGQAIEPSCWIPILQAKRCILAGDQCQLAPVIFSRKALESGLGISLLERAATLHEGVLTTRLTTQYRMNDAIASWASKEMYGGLLKSSKSVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSLYNEGEADIVLQHVFSLIYSGVNPAAIVVQSPYVAQVQLLRDMLDGFPEAAGTEVSTIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLAVVCDSSTICHNTFLARLMRHIRHFGRVKHVEPDSFGGGFGLGMNPILPSID 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02672 962 Coils Coil 612 632 - -
Car04g02672 962 Pfam AAA domain 487 704 IPR041677 GO:0004386
Car04g02672 962 Coils Coil 588 608 - -
Car04g02672 962 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 36 961 - -
Car04g02672 962 Gene3D - 315 421 - -
Car04g02672 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 924 IPR027417 -
Car04g02672 962 CDD DEXXQc_SMUBP2 488 736 - -
Car04g02672 962 CDD SF1_C_Upf1 737 933 IPR041679 -
Car04g02672 962 Gene3D - 422 719 IPR027417 -
Car04g02672 962 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 36 961 - -
Car04g02672 962 Pfam AAA domain 713 916 IPR041679 -
Car04g02672 962 MobiDBLite consensus disorder prediction 59 86 - -
Car04g02672 962 Gene3D - 735 944 IPR027417 -
Car04g02672 962 SMART ultradead3 483 735 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02672 Car-Chr4 51434003 51440162 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02672 485 676 Core DNA Replication Machinery Family AT1G08840 26.289 6.34e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02672 - - aip:107625008 1518.06