Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02600 ATGGAAACTACAAGGCGTTGGTTTAGTAAGTTCAAGTTACGTGATAAAACAAAGTCTCCAAGAAAAAATGAAGCTACAAGCACGGCAAAAGAAGGGTCAAAAACACCAATAAATGAAGAACTTCCTTCAAGTGCAACCAAACAGAAGGTTGAAGCTGCAAAGCATTACATTGAAAATCATTATAAGAAACAGAGGCAAAGCTTGCAGGAGAGGAAGGAAAGACGTAATATGCTAGAAAAGAAACTGGCTGATGCTGAAGTCTCCGAGGAAGAGCAGAACAATTTGCTCAAGTATTTGGAGCAAAAGGAGACAGAAATCATGCGTCGTCAGAGACATAAGATGGGGGCTGACGACTTTGAGCCCCTAACTATGATTGGGAAGGGTGCATTTGGAGAGGTTAGAGTCTGCCGGGAAAAGGCAACTGGTCATGTATATGCTATGAAGAAACTTAAGAAATCCGAAATGCTTCGTAGAGGCCAGGTTGAACATGTCAAAGCTGAGAGGAACCTTCTTGCAGAAGTTGACAGCAATTGCATTGTAAAACTTTATTGTTCCTTTCAAGATGACGAGAATTTATACCTCATAATGGAGTATCTACCTGGTGGAGATATGATGACGTTGCTTATGCGGAAAGATACACTGACTGAAGATGAGGCTAGGTTTTACGTCGGGGAGACTGTTCTAGCCGTAGAGTCCATTCATAAACATAATTATATTCACAGAGATATCAAGCCTGACAACTTGCTGCTTGATAGAAATGGTCACATGAAACTATCCGATTTTGGATTATGTAAGCCGCTAGACTGCAGTAACCTTCAGGAAAAAGACTTATCTGTTGGAGTGAACAGAAGTGGAGCCCTTCAAAGTGACGGACGTCCTTCAGCTCCTAAACGATCACAACAGGAGCAACTGCAGCATTGGCAGAAAAATCGTCGAATGCTCGCCTATTCTACGGTTGGAACACCCGATTATATTGCTCCTGAAGTTTTGTTGAAGAAAGGATATGGCTTGGAATGTGATTGGTGGTCTCTAGGAGCCATAATGTATGAAATGCTTGTGGGGTATCCACCATTTTATTCAGACGAACCGATGGCAACTTGTAGAAAGATAGTAAATTGGAGAACTCATTTAAAATTTCCAGAAGAAGCCAAACTATCACCAGAGGCAAAGGATCTTATTTGCAGACTCCTATGTAATGTAGAGCTGAGGATTGGAACCAAAGGAGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGTATTGAGTGGGACAAATTGTACCAAATGGAAGCTGCTTTTATGCCCGAGGTCAACGATGAATTAGATACTCAAAATTTTGAGAAATTTGAAGAGGTGGACAAGCAAACTAAACCTTCCTCAAAGGCAGGGCCATGGAGAAAGATGCTTCCATCGAAAGATATTAACTTTGTCGGTTACACATACAAGAATTATGAAATTGTGGACGATAATGATATACCTGGATTTGCTGAATTGAAGAAGAAGAGCACAAAACCAAAAAGGCCATCTATTAAGACCTTATTTGATGATGAATCAGCTAAGGCTTCTTCTAATCAACCTGTTAGAGGGAGCTTCTTAAATCTCTTACCTCCTCAAATGGAAGTTCCAGAGAAAAATGAATCACAATGA 1647 0.4068 METTRRWFSKFKLRDKTKSPRKNEATSTAKEGSKTPINEELPSSATKQKVEAAKHYIENHYKKQRQSLQERKERRNMLEKKLADAEVSEEEQNNLLKYLEQKETEIMRRQRHKMGADDFEPLTMIGKGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDENLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAVESIHKHNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDLSVGVNRSGALQSDGRPSAPKRSQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGLECDWWSLGAIMYEMLVGYPPFYSDEPMATCRKIVNWRTHLKFPEEAKLSPEAKDLICRLLCNVELRIGTKGADEIKAHPWFKGIEWDKLYQMEAAFMPEVNDELDTQNFEKFEEVDKQTKPSSKAGPWRKMLPSKDINFVGYTYKNYEIVDDNDIPGFAELKKKSTKPKRPSIKTLFDDESAKASSNQPVRGSFLNLLPPQMEVPEKNESQ 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02600 548 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 520 - -
Car04g02600 548 Gene3D Phosphorylase Kinase; domain 1 90 202 - -
Car04g02600 548 Coils Coil 61 102 - -
Car04g02600 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Car04g02600 548 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 41 520 - -
Car04g02600 548 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Car04g02600 548 MobiDBLite consensus disorder prediction 499 514 - -
Car04g02600 548 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Car04g02600 548 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Car04g02600 548 MobiDBLite consensus disorder prediction 516 531 - -
Car04g02600 548 Gene3D Transferase(Phosphotransferase) domain 1 203 281 - -
Car04g02600 548 Gene3D Transferase(Phosphotransferase) domain 1 310 438 - -
Car04g02600 548 MobiDBLite consensus disorder prediction 1 28 - -
Car04g02600 548 SMART serkin_6 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02600 548 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02600 548 CDD STKc_NDR_like 117 482 - -
Car04g02600 548 ProSiteProfiles Protein kinase domain profile. 119 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02600 548 MobiDBLite consensus disorder prediction 499 548 - -
Car04g02600 548 SUPERFAMILY Protein kinase-like (PK-like) 94 466 IPR011009 -
Car04g02600 548 MobiDBLite consensus disorder prediction 29 45 - -
Car04g02600 548 MobiDBLite consensus disorder prediction 1 49 - -
Car04g02600 548 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02600 Car-Chr4 49617758 49624988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02600 1 542 AGC Kinase Gene Family AT4G14350 81.550 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Car04g02600 Pkinase 3.7e-64 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02600 04 49617758 49624988 Car04g02600 04 49617758 49624988 ECH
Car03g02338 03 69306828 69313573 Car04g02600 04 49617758 49624988 PCT