Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02592 ATGGCAGATCTTTCTAGTTATGGGAATCCTGAACGTGATATTGAGCAAGTATTCATTACTTTAAAAAGGGGCACTCAGTTTGTTAAGTACAGTCGAAAAGGGAAGCCAAAACTTTGTAATTTCAGGCTTTCACAGGATGAAACATCACTGATTTGGATTTCTCATGGAAAGGAAAAGAATCTGAAATTGTCGTCAGTTTTGCGCATCATCTCAGGACAGAGAACAGCTGTCTTTAGACGATATTTGCGTCCTGAAAAGGATTATCTATCGTTTTCACTTATTTATAAGAAAGGCGAACGGTCGCTTGATCTGATTTGCAAGGATACAACTGAGGTTGAGGTATGGCTTTTGGGCCTTAACGCATTAATTTCTACTGGACAGCTTAGAAAGAGGCGCTCTGGAAGTGATTTAACAGATGATAGTGTTGAATTTACTCCGAATGATCGTCCTTTTGGTGGAGCACTAGAGTTTACTTCAAGTATTTCCCGAGGCAGGTTTTCTTTTGAATCAGTTACTCGTGAATCCACATCGAGTAGAGGAAGATCAGATGTGGGGTCAGATCGAGCAAGTATGCCAATAAGGACGAGTGTTGGAGATGGTTCCCGTGTCAGTGTTTCAAGTATCGGCTATGCTAGTAGCGCAGGATCAGGACCAGATGACATAGAGTCTCTAGGTGATGTTTTCATATGGGGAGAGGTTTGGGCCGACAGCAATTCCTCTGATGCGTTAGGGAGTCAAGTCGCTTCGAAGACTGATGTGTTGATTCCTAAGCCATTAGAGTCTGACGTTGTTCTTGATGTTCATCAGATAGAACCCGGCGTAAGCCACATCGCTCTAGTGACGAGGCAAGGAGAGGTTTTTACCTGGGGAGAGGACTCTGGTGGAAGACTCGGACACGGGTTTGATAAAGATTTCAGTAAACCCCATCTTGTTGACTCCCTAGCAGTTACTAATGTGAGTTTTGTTGCTTGTGGTGAATATCATACATGTGCTATATCTACATCTGGGGATCTATACACATGGGGTGATGGTACACATAATGCCGGAATTCTAGGTCATGGAACGGATGTTTGCCACTGTATACCGAAGAGGGTCAATGGTCCTTTACAGGGACTTCAGGTTGTATCTATAGCATGTGGCACATGGCATACGGCATTGGTAACTTCCAACGGGAAACTTTTTACATTTGGCGATGGAATGCTTGGTGTGTTGGGGCATGGAGATAGAGAGAGTGTGTCATATCCAAAGGAGGTACAATTATTGAGTGGACACAAGGCTTTTAAGGTTGCATGTGGATTGTGGCACACGGCAGCCATTATAGAGGTTATGGATCAATCTGGTTCAAACACTCCTTCGTCAAGGAGGCTATTCACATGGGGTGATGGTGATCAATATCGTTTAGGTCATGTTAACAAGGAAACCTGCCTTCAACCAACTTGTGTGGCTGCACTTGCTGAATATAATTTTCAGCAGGTTGCATGTGGACACAGTTTGACTGTTGCACTAACTGCATCCGGTCATGTTTTTACGATGGGAAGCATGGCATACGGTCAACTTGGAAATCCAATGTCTGATGGAAAAATACCGATTCTGGTTAGAGATAGGTTATTAGGCGAATCCGTCGAGGAAATATCATGCGGAGCACATCATGTTGCTGTATTGACTTCAAGAAGTGAACTATATACTTGGGGAAGAGGTGCTAATGGAAGGTTAGGACATGGAGACATAGAAGATCAGAAAACTCCAACATTGGTGGAAGCCTTGAAAGAAAGGCATGTAAAGAATATCTCGTGTGGCGCAAACTTTACGACTTGTATATGCATACATAAATGGGTTTCTGGCGCTGACCAATCTGTTTGTTCCGGTTGTAGACAACCGTTTGGTTTTACTAGAAAAAGGCATAACTGTTACCATTGTGGATTGGTGTATTGTCATCCTTGTAGTTCAAAAAAGGCACTGAGAGCAGCATTAGCTCCAACACCTAGCAAACCACATCGCGTTTGTGATGCTTGTTATGCTAAGCTTAAAGGTTCTGAGAGTAGTAATGCTTCAAATTTTAATCGAGATATTACCCGTCCGTCTAGTTTGACGAACGGAAGGGAAAGATTCGACAGGGGAGAGATTAGGCCTTCAAGAACTCTCTTTTCTCCTGCCACAGGTCTAGCAAAATACCTCGACATAAGGAGTAATATGCATGGAAGTAGTTCACATGAATCGTTTTCTGCAGCCAGAGATGCTCAAGTTCCGTTAACTTTACATTTGAAAGATGTCATATTTCCAGGTTCATCAAGTCCCATGCAGAATCCATCTAGGCCTCTTATTCAGCCGCAAAGTCAACCTCCAGCTCCACCTTCATCATCGGCTACTTCAAGACCAACCTCACCGTATGCAAAAAGACCGCCTAGCCCAACACGTTCTATCTCGCCTGGATTTTCGAAAAGCCTTATTGATAATTTAAAGAAGAAAAGTGAGCTTTTGAATCAAGAAGTCTCAAAGTTGCAAAGTCATATTCGAAGTTTAAAGCAAAAGGGTGAAATGCAAGATATGAAGATTCAGGAGCTTCAGAAAAATATTGAGGAAGCCAATCTATTGGCTGGAGATGAATCATCTAAGCATAGAGAAGCAAAGGAATACATCAAGTTCATGACAGATGAGTTGGGGTGCGTGATTGAGAAGTTGCCACCAGAGTTTCCTGGCAGTGAAAACTTGAGAGAGATCCATGCTCATGCTCAATATTTACTGAAAGAAAATGTAGAATTTGAATCTTCTTCCTTCCGACCGAGCTTCGAGTCCGAGCAACAAAACACACCTGATATACCAGCATCAGGCAGCGACTCTTCAAACCTGCAAAAGCAAAGACTGGAAGAAAATGAAGAAGTTTCTGAGCCTCTTCCATCTATTGATGGAGAAAATGGTGTTCAAGAAAGCATCAGCTCATATATATCTAGTACAGGAGTGTCTTTGCCGAGCTTGGAAAATAGTTCCAGATCCCCCGAGTCTTACAGGCCTACGAGAGAAGGAGAAACATCAATCATTGAACAATTTGAACATGGTGTTTATGTCACACTCATAGTAATTCCTGGTGGCGGAAAAGTTTTCAAACGTGTTAGATTCAGTAGGAGAAGATTCAGTGAGCAACAAGCAGAAGAATGGTGGAACAATAACAAAGATAGGTTGCTTAGGAAATATAGTCCAGCACCTATAAAGAATGCAGTTACTGGTTCATCTGTGACTCCACCTAACGCTGAATAA 3252 0.4253 MADLSSYGNPERDIEQVFITLKRGTQFVKYSRKGKPKLCNFRLSQDETSLIWISHGKEKNLKLSSVLRIISGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDTTEVEVWLLGLNALISTGQLRKRRSGSDLTDDSVEFTPNDRPFGGALEFTSSISRGRFSFESVTRESTSSRGRSDVGSDRASMPIRTSVGDGSRVSVSSIGYASSAGSGPDDIESLGDVFIWGEVWADSNSSDALGSQVASKTDVLIPKPLESDVVLDVHQIEPGVSHIALVTRQGEVFTWGEDSGGRLGHGFDKDFSKPHLVDSLAVTNVSFVACGEYHTCAISTSGDLYTWGDGTHNAGILGHGTDVCHCIPKRVNGPLQGLQVVSIACGTWHTALVTSNGKLFTFGDGMLGVLGHGDRESVSYPKEVQLLSGHKAFKVACGLWHTAAIIEVMDQSGSNTPSSRRLFTWGDGDQYRLGHVNKETCLQPTCVAALAEYNFQQVACGHSLTVALTASGHVFTMGSMAYGQLGNPMSDGKIPILVRDRLLGESVEEISCGAHHVAVLTSRSELYTWGRGANGRLGHGDIEDQKTPTLVEALKERHVKNISCGANFTTCICIHKWVSGADQSVCSGCRQPFGFTRKRHNCYHCGLVYCHPCSSKKALRAALAPTPSKPHRVCDACYAKLKGSESSNASNFNRDITRPSSLTNGRERFDRGEIRPSRTLFSPATGLAKYLDIRSNMHGSSSHESFSAARDAQVPLTLHLKDVIFPGSSSPMQNPSRPLIQPQSQPPAPPSSSATSRPTSPYAKRPPSPTRSISPGFSKSLIDNLKKKSELLNQEVSKLQSHIRSLKQKGEMQDMKIQELQKNIEEANLLAGDESSKHREAKEYIKFMTDELGCVIEKLPPEFPGSENLREIHAHAQYLLKENVEFESSSFRPSFESEQQNTPDIPASGSDSSNLQKQRLEENEEVSEPLPSIDGENGVQESISSYISSTGVSLPSLENSSRSPESYRPTREGETSIIEQFEHGVYVTLIVIPGGGKVFKRVRFSRRRFSEQQAEEWWNNNKDRLLRKYSPAPIKNAVTGSSVTPPNAE 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02592 1083 Gene3D - 347 524 IPR009091 -
Car04g02592 1083 Gene3D - 525 622 IPR009091 -
Car04g02592 1083 Gene3D - 177 346 IPR009091 -
Car04g02592 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 506 557 IPR000408 -
Car04g02592 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 391 442 IPR000408 -
Car04g02592 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 390 439 IPR000408 -
Car04g02592 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 505 554 IPR000408 -
Car04g02592 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 284 332 IPR000408 -
Car04g02592 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 559 606 IPR000408 -
Car04g02592 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 335 386 IPR000408 -
Car04g02592 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 455 502 IPR000408 -
Car04g02592 1083 MobiDBLite consensus disorder prediction 759 812 - -
Car04g02592 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 682 IPR013083 -
Car04g02592 1083 PRINTS Chromosome condensation regulator RCC1 signature 286 302 IPR000408 -
Car04g02592 1083 PRINTS Chromosome condensation regulator RCC1 signature 336 352 IPR000408 -
Car04g02592 1083 PRINTS Chromosome condensation regulator RCC1 signature 377 393 IPR000408 -
Car04g02592 1083 PRINTS Chromosome condensation regulator RCC1 signature 393 407 IPR000408 -
Car04g02592 1083 PRINTS Chromosome condensation regulator RCC1 signature 495 513 IPR000408 -
Car04g02592 1083 PRINTS Chromosome condensation regulator RCC1 signature 553 574 IPR000408 -
Car04g02592 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 558 609 IPR000408 -
Car04g02592 1083 MobiDBLite consensus disorder prediction 680 711 - -
Car04g02592 1083 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 429 439 IPR000408 -
Car04g02592 1083 Pfam FYVE zinc finger 610 675 IPR000306 GO:0046872
Car04g02592 1083 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 13 1067 - -
Car04g02592 1083 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 377 387 IPR000408 -
Car04g02592 1083 CDD PH_PLC_plant-like 12 124 - -
Car04g02592 1083 MobiDBLite consensus disorder prediction 984 1000 - -
Car04g02592 1083 Pfam Transcription factor regulating root and shoot growth via Pin3 1010 1063 IPR013591 -
Car04g02592 1083 SUPERFAMILY RCC1/BLIP-II 224 611 IPR009091 -
Car04g02592 1083 SUPERFAMILY PH domain-like 13 123 - -
Car04g02592 1083 MobiDBLite consensus disorder prediction 924 972 - -
Car04g02592 1083 MobiDBLite consensus disorder prediction 774 788 - -
Car04g02592 1083 Gene3D - 13 132 IPR011993 -
Car04g02592 1083 MobiDBLite consensus disorder prediction 172 200 - -
Car04g02592 1083 ProSiteProfiles BRX domain profile. 1009 1064 IPR013591 -
Car04g02592 1083 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1067 - -
Car04g02592 1083 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 614 676 IPR017455 -
Car04g02592 1083 MobiDBLite consensus disorder prediction 984 1006 - -
Car04g02592 1083 SMART fyve_4 608 677 IPR000306 GO:0046872
Car04g02592 1083 Coils Coil 816 871 - -
Car04g02592 1083 SUPERFAMILY FYVE/PHD zinc finger 610 682 IPR011011 -
Car04g02592 1083 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Car04g02592 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 284 335 IPR000408 -
Car04g02592 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 336 390 IPR000408 -
Car04g02592 1083 MobiDBLite consensus disorder prediction 924 950 - -
Car04g02592 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 454 505 IPR000408 -
Car04g02592 1083 MobiDBLite consensus disorder prediction 680 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02592 Car-Chr4 49288763 49295434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02592 1006 1064 Major Intrinsic Protein MIP AT1G31880 38.983 5.67e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02592 - - gmx:100778984 1513.05