Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02588 ATGGTTAGAGCTCCTTGTTGTGAAAAAAAGGGATTGAAGAAGGGTCCTTGGACCCAAGAAGAAGATGAAATTCTCATTTCCTACATACAAAAACATGGACATAGCAATTGGCGTGCCCTCCCCAAACATGCCGGTTTATTAAGATGTGGAAAGAGTTGCAGACTTAGATGGATTAATTATTTAAGACCAGATATTAAGAGAGGAAATTTTACAAATGAAGAAGAGGAAATTATCATTAAGATGCATGAGTTGCTAGGGAACAGGTGGTCAGTAATAGCTGCAAAGTTACCTGGAAGAACAGATAATGAAATAAAAAATGTGTGGCACACTCACTTGAAGAAGAAACTACTCAAAACCAATAGTCAACAAAATTCAAATACCATAAAAAGAGTTTCAAAACCAAAAATCAATAGAACCAATTCCAATTCAAGTACTTTAACTCAATCTTCTTCAGAACCTTCTAATTATTTCCTTGAAATGGAAACTACATCATCAATTTGCACTTTTTCTAGTGATTTTTCATCACAAGGTAAATTTATGGACAACAACATTAATTGTGAAGAGCCTAAGCCTGAAATTGATGAAAGTTTTTGGTCAGAGACAGTAACTGATGATGAAATTAGTTCCACCATGCTAACAAATTCTTGGACAGTTTCAAATGAATTGCCAAATCAACAATACCCTGTAGTGGAAACTTTCCAAAATCAAGAGAAGTATAATGGTTTTAGTTCAAATTCCTTTGATGATGATGATGGAATGGATTTTTGGTATGATTTGTTTATCAGATCAGGAGAATCAACAGATTTGCCAGAGTTCTAG 819 0.3419 MVRAPCCEKKGLKKGPWTQEEDEILISYIQKHGHSNWRALPKHAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEEIIIKMHELLGNRWSVIAAKLPGRTDNEIKNVWHTHLKKKLLKTNSQQNSNTIKRVSKPKINRTNSNSSTLTQSSSEPSNYFLEMETTSSICTFSSDFSSQGKFMDNNINCEEPKPEIDESFWSETVTDDEISSTMLTNSWTVSNELPNQQYPVVETFQNQEKYNGFSSNSFDDDDGMDFWYDLFIRSGESTDLPEF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02588 272 CDD SANT 69 112 IPR001005 -
Car04g02588 272 CDD SANT 16 61 IPR001005 -
Car04g02588 272 Gene3D - 13 66 - -
Car04g02588 272 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car04g02588 272 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Car04g02588 272 SMART sant 66 114 IPR001005 -
Car04g02588 272 SMART sant 13 63 IPR001005 -
Car04g02588 272 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 264 - -
Car04g02588 272 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 264 - -
Car04g02588 272 MobiDBLite consensus disorder prediction 133 153 - -
Car04g02588 272 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Car04g02588 272 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car04g02588 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car04g02588 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car04g02588 272 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car04g02588 272 Gene3D - 68 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02588 Car-Chr4 49220831 49223026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02588 1 272 MYB Transcription Factor Family AT2G31180 49.818 4.85e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car04g02588 Myb_DNA-binding 3.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02588 K09422 - gmx:100806975 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02588 04 49220831 49223026 Car04g02588 04 49220831 49223026 ECH
Car03g02323 03 69184112 69186701 Car04g02588 04 49220831 49223026 PCT