Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02583 ATGGATTGTTCCTTCATACCCAATTTATCAAAATCAAATTTTTTTGAAGAATCTTCATTTGGGTCATTAGATTCATTCTCTTTGAATCCAAAAAACCACGAATTTCTTCCCTTCAATGAAAACGACCCAGAAGAGATGCTTCTATATGGCATGATAACATCATCATCACAACAAAAAACACTAATCACAAATGAAAATGAATCACCAAAGAAAAACAAGTCCTACCGCGGCGTTCGGCGGCGACCGTGGGGGAAATTCGCGGCGGAGATAAGGGATTCAACAAGACATGGCATAAGGGTTTGGCTAGGAACATTTGATAGTGCTGAAGCAGCAGCACTTGCTTATGATCAAGCTGCTTTTTCAATGAAAGGTTCAGCTGCAACACTTAATTTTCCAGTTGAAAAAGTTAAGGAATCACTTATGGAAATGAATTATGTGTTGTCTAATGATGATGATGAGTGTTGTTCCCCTGTTGTTGCTTTGAAGAGAAAGCATTCCATGAGACGTAAAATGGATGAAAAGAAGAAGAAGAAACAAGATATGGATGTTGTTAGGATTGATAATTTGGTTGTGTTTGAAGATCTTGGTGCTGAATATTTGGAACAATTGTTGATGTCTTCTGATAATCAAAATACTTGGTGA 642 0.3707 MDCSFIPNLSKSNFFEESSFGSLDSFSLNPKNHEFLPFNENDPEEMLLYGMITSSSQQKTLITNENESPKKNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMKGSAATLNFPVEKVKESLMEMNYVLSNDDDECCSPVVALKRKHSMRRKMDEKKKKKQDMDVVRIDNLVVFEDLGAEYLEQLLMSSDNQNTW 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02583 213 CDD AP2 73 133 IPR001471 GO:0003700|GO:0006355
Car04g02583 213 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Car04g02583 213 PANTHER DNA-BINDING DOMAIN 26 206 IPR044808 GO:0003700|GO:0009873
Car04g02583 213 Gene3D AP2/ERF domain 73 134 IPR036955 GO:0003700|GO:0006355
Car04g02583 213 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Car04g02583 213 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Car04g02583 213 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Car04g02583 213 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Car04g02583 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 26 206 - -
Car04g02583 213 SUPERFAMILY DNA-binding domain 74 134 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02583 Car-Chr4 49063142 49063917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02583 36 213 AP2-EREBP Transcription Factor Family AT3G23240 64.171 1.03e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car04g02583 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02583 K14516 - qsu:111996147 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02583 04 49063142 49063917 Car04g02583 04 49063142 49063917 ECH
Car03g02316 03 69113089 69113818 Car04g02583 04 49063142 49063917 PCT