Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02582 ATGGATTTTGCAGCCAAAAAACACTTGATCCATATATCAAATGCATCATCACCATCATTTGTATCACAAACGTTTCCACCTATCCCAAATCAACCTAATTATGTTCAAAATTTTCCAATAATAGCAATCATTGTAGTGGGAATGTTGGCCACATCTCTCCTTCTTATAGTCTACTACACCTTCGTGATCAAATGTTGTCTAAATTGGAACCATGTTGATCTTGTTAGAGTAAGACGAATTTCTCTATCAAATCGATATGAAGAACAATCGTCAACAAATTCTAATGTGGCATCAGAGCCTAAAGGACTAGAGGAATCAATGATTCAATCAATTCCGGTGATTCATTTCCAAAAAGAAAGAGACTATGGTGAAAGAAGCTTTTGTGAATGTGTAGTTTGTTTGAATGAGTTTCAACAAGATGAGAAACTAAGGGTTATACCAAATTGCAACCATGTATTTCACATTGATTGTGTTGATCTTTGGCTTCAAAATAATGCAAATTGTCCACTTTGTAGAAGAAGAATTTCATTGACAAGACAAGTTGAGCATGTTCTCACTCCAAGACCTTCATCTTATTATCAAAGCCAAAATGTTGAAGATTTTGTTGTGATTGATTTGGAAAATAATGAAAATGATGAAGGAGAAAACATGCATGGAAGACAAGAAAGAGGCAAAGAATTAATGGAGGTACAAAGAGATACTATTAGTCCTTCAAACATGAAGTTGGAACATAGAATTTTACACAAGAATGAAATTAAGCTTCATAAAGTGACAAGCATGGGGGATGAGTGTATATTAGGTATTAATGACAAAGATGATGGCTTTTTAGTTCAACCAATTAGAAGATCTTTTTCAATGGACTTATCAATTAAGAAATCTTTATATCAACAAAATCTACATGTTGATGAGGTTAGCTCCATTGATGTTTGTGGTGATAGTAGTAGTAGAGTCAAGAGATCTTTCTTTTCCTTTGGACATGGAAGTAGATCCAAAAGTGTTGTTTTACCTATTCATCTGGACCCTTGA 1026 0.3382 MDFAAKKHLIHISNASSPSFVSQTFPPIPNQPNYVQNFPIIAIIVVGMLATSLLLIVYYTFVIKCCLNWNHVDLVRVRRISLSNRYEEQSSTNSNVASEPKGLEESMIQSIPVIHFQKERDYGERSFCECVVCLNEFQQDEKLRVIPNCNHVFHIDCVDLWLQNNANCPLCRRRISLTRQVEHVLTPRPSSYYQSQNVEDFVVIDLENNENDEGENMHGRQERGKELMEVQRDTISPSNMKLEHRILHKNEIKLHKVTSMGDECILGINDKDDGFLVQPIRRSFSMDLSIKKSLYQQNLHVDEVSSIDVCGDSSSRVKRSFFSFGHGSRSKSVVLPIHLDP 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02582 341 PANTHER RING-H2 FINGER PROTEIN ATL16 21 340 - -
Car04g02582 341 PANTHER RING-H2 FINGER PROTEIN ATL16 21 340 IPR044600 GO:0016567|GO:0016740
Car04g02582 341 SUPERFAMILY RING/U-box 107 178 - -
Car04g02582 341 Pfam Ring finger domain 129 172 IPR001841 -
Car04g02582 341 SMART ring_2 130 171 IPR001841 -
Car04g02582 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 177 IPR013083 -
Car04g02582 341 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Car04g02582 341 CDD RING-H2_PA-TM-RING 129 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02582 Car-Chr4 49005329 49006548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02582 28 341 C3H Transcription Factor Family AT1G04360 42.466 3.04e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02582 - - mtr:MTR_1g043410 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02582 04 49005329 49006548 Car04g02582 04 49005329 49006548 ECH
Car03g02311 03 69095924 69097214 Car04g02582 04 49005329 49006548 PCT