Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02581 ATGGATTCGATAGAGTTATTAGAAGACAGCGCTTCTTGGGATTTTCTCGATTACTCTTTCATCGATCCTCCTCCCACCGATTTCCTTTGGTCCAATTCAAGTTTGAGCACGGAAATCGACATTCCAAGTGGTGTCGTCGCATGTCAAGAAGAGAATACCAGGAAGAGGGGACGCACTGAATCATGCTACAAGGCAGGAACAAAAGCTTGCCGTGAGAAATTGCGGAGGGAGAAACTCAATGAAAGGTTTTGTGATTTGAGTGCTGTTTTGGAACCCGGGAGACCTGTGAGAACAGATAAACCTGCTATACTTGACGATGCTATCAGAGTCTTGAGCCAACTCAAAACTGAAGCTCAGGAACTCAAAGAAGCAAATGAAAAATTAGTAGAGGAAATAAAATGTTTGAAGGCAGAGAAAATCGAACTCCGCGAAGAGAAACTTGTTCTGAAAGCTGACAAAGAAAAGATTGAGAAGCAGTTGAAAACTTTGCCTATTTCACCAGCAGGGTTTATGCCTCCTCCTATGGCTGCTTATCAAGCAAGGATGAACAAGATGGCTGTTTATCCAAACTACGGCTATATCCCGATGTGGCAATATCTTCCTCATTCCGCTCGCGATACATCCCAAGATCATGAGCTCAGGCCTCCTGCTGCTTAG 657 0.4414 MDSIELLEDSASWDFLDYSFIDPPPTDFLWSNSSLSTEIDIPSGVVACQEENTRKRGRTESCYKAGTKACREKLRREKLNERFCDLSAVLEPGRPVRTDKPAILDDAIRVLSQLKTEAQELKEANEKLVEEIKCLKAEKIELREEKLVLKADKEKIEKQLKTLPISPAGFMPPPMAAYQARMNKMAVYPNYGYIPMWQYLPHSARDTSQDHELRPPAA 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02581 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 114 IPR011598 GO:0046983
Car04g02581 218 CDD bHLH_AtILR3_like 68 143 - -
Car04g02581 218 PANTHER BHLH TRANSCRIPTION FACTOR 2 218 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Car04g02581 218 PANTHER TRANSCRIPTION FACTOR BHLH104 2 218 - -
Car04g02581 218 Pfam Helix-loop-helix DNA-binding domain 67 114 IPR011598 GO:0046983
Car04g02581 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 128 IPR036638 GO:0046983
Car04g02581 218 SMART finulus 69 120 IPR011598 GO:0046983
Car04g02581 218 Gene3D - 67 143 IPR036638 GO:0046983
Car04g02581 218 Coils Coil 104 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02581 Car-Chr4 48985785 48989268 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02581 53 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 69.461 2.67e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g02581 HLH 6.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02581 - - mtr:MTR_1g043430 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02581 04 48985785 48989268 Car04g02581 04 48985785 48989268 ECH