Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02579 ATGGAGAACGACAACGTCGTTGTTGTAAACGGCAATAGAGTCCTCGTCGCCCAGCCTCTCACTGTGCTCCGTGCCCTAACCAGCACTGGTGGTGCTCGCGTTCTAGCAACGCCGCCTAATATGAACCCTAACTCAGATGATTCCGACGTATGCAAAACTCCGATGATTAAAGTGAAAGACGAGCCTCAAGAAGAAGAAGTGAAAACCGTTTCCGTTGGTTCTCATTCCGAAGCGGTTACCGATGTGCGACATTCGATGCACTCGGTCGACGATTCTCTCAAATCTACGAACACGAAAGTTGCGTCGGTAGGTGAATCTTTGAAATCGATGAAAGATGAACCAACGGTTCAAATGACGGAAAATAGAGCCGCTGTTGATGTGGTTGGTGAGACACAAAAGTCTGTTAAGGTTGAATCGGTAGATGAATCGCTGAAACCAATGGAAGTTGAACCGAGGATTCGATCGATGGAAGAAGTTAACAATGTCGATTGTGAGACGCATGGATCAGTTAAGGTTGAACCTGTTCAAAAAACAACATCGGTACAAGCGAAAGAAGGTTCCGACAATCAAACGCTTAGCAATGAAGTGGAGGCGTTGAAGGTAGTGAATAAGGAGAAACAATCTGTTAGCGATGATGTGCAGGTGTTGAAGGTGGTGAAGAAAGAACCAGTGGAAGAGAAGAAGATTCCAATACCGAACCTCGAGGACGGTGAGTTTCCTGTAGAACCTGGGTGGTCATTGCTGGGAAGGAAGATTGAGGTTGCAACTTCAACTGCTAGGGGATTGAGGAGATTGGTGGACAATGAGATTGTTCATTTCATTTTCCCTAATCCACATACCTCTTACAAGTTCCAATGGATAGTTCGCGTTGAAACCAAACGTTCTGGAGTGGTTGGGAGGCTGCCAATGGAATGGGCAAAAGCTGTCATTCCTCTAGTGCAATCTGGAAATGTTAAGGTTCGAGGTCGATGCATTGCTACACCGAATAAGCTGGAAATGATGCAAGATATAATGTTGTTAGTGAGTTTTTATGTTCATCACTCTGTTTTCTCTGAGTGTGTTGATACCTCTTGGAAGCTAGAGGCTTGTGGTACCATTAATTCTACTGCTTATCCACTTCTTACACTGTTAAATATGTTAGAGATTGAGCCACATAGGAAGGCTGATTTCACCCCTGAGGAAATGAAAGCTCGGAAGCGGATACTTAAACTTGATTCAGATGAAGCTTCAGCATTGCATGTCACTAAGCGAAGAAAAGGTGTCAGTGAGCCGCTGCCAGAGCCAAATGAGAATGAACAAGCTCTTTCAGAATCAGCTTTGAATAAACTTGTTGGAGCAGCAGAAGTCTTTGACCTGGAGGAGATGGAAGCACCGAGCACCTTGATGTGTTGTCTGAAGCCTTACCAGAGTCAAGCGCTGTATTGGATGACAGAAATTGAGAAGGGAGGTGATGATGAAAATGCTGAGAGAAATCTACATCCTTGCTGGTCAGCATACAATATATGCAATGGAAAGACAATTTATGTTAACATATTTACCGGGGAAGCAGCAAAGAAATTTCCACAAGCCACACAGATGGCAAGAGGAGGAATTCTGGCGGATGCAATGGGACTTGGAAAGACTGTTATGACAATTGCTCTGATTCTCAGTAATCCAGGCAGGGTGAATGACAATATTTTCACAAATAAGAGGAGGAATATTGACTCATCGTATAAAGTAGAGGGTGGCACTTTGATTGTTTGTCCCATGGCTTTATTGGGTCAGTGGAAGGATGAGCTTGAAACACATTCAAAATCAGGCAGCATATCCATATTTGTACATTATGGTGGGGGTAGAACCACAAACCCCGATTTGTTGTCAGAGTATGATGTTGTCTTGACAACATATGGTGTCTTATCAGCTTCATATAAAAGTGAGGGAGAGAATAGCATCTACCACAGGGTCCAATGGTTCAGAGTGGTGCTAGACGAAGCTCATCATATAAAAGCCCATAAAAGTCAGGTTGCCCAGGCTGCTATTACTTTGTCATCACAATGCCGCTGGTGTCTAACAGGAACCCCACTTCAGAATAGCTTGGAAGATCTATACAGCCTCTTGAGTTTTTTGCGGGTTGAACCTTGGTGCAACTGGCAGTGGTGGACTAAGTTGATTCAAAAGCCTTATGAGCATGGTGATCAAAGAGCCCTGAAATTGGTCAAGGGAGTTTTGAGGACACTGATGTTAAGAAGAACGAAGGAAACAAAGGATAATGAAGGAAGGCCTATACTTGTGCTGCCACCAACTGATATTCAATTGATTGAGTGTGAACAGTCAGAATCTGAACGGGACTTCTATGATGCACTCTTCTTGAGATCTAAAGTCCAATTTGAGCAGTATGTTGCACAAGGAAAGGTTCTTAACCACTATGCAAATATCCTTGACCTACTAATGCAGTTGAGGCGGTGCTGTAACCATCCACTTTTAGTCATGTGTGGAAGTGTTCCTGAGAAATATGCAGACTTGAGCAGACTTGCAAGAAAATTCCTAGAGTCCCATACTGAATCATCCAATATATGCCATGAAAGTGATTCACAGCAAAATGCAAAAATGAACAAACTTGCTAGTAGATTCCTGCAAAATTCTGATGCTTCGCACTCTGTCCAATCTCGGGAATACATTGATGAGGTTTTGGGGCATATTCAAAAGGGTGAAACTGTAGAATGCTCTATATGTATGGAATCACCAGATGATCCTGTTTTGACACCATGTGCACATCAGTTTTGTAGAGAATGCCTATTCAATTGCTGGGGGACCTCAATGGGTGGTAAGTGTCCAATCTGTCGTCAATCACTCAAGAAAAGTGATCTTGTTGTACTTCAATCTGAAAGCCCATTTGAGGTTGATATTGAGAACAATTTGACGGAGTCTTCAAAGGTTTCAAGGCTGTTTGATTTCTTAGAGCATATTCAGAAAACGTCAGATGAAAAAAGTATCGTCTTTAGTCAATGGACTTCATTTTTTGATTTGTTGGAGAATCCATTGAAGAGGAGAGGGATAGGATTCTTAAGATTTGATGGAAAATTGACTCAGAAGCAGAGAGAGAAAATTCTGAAAGAATTTAACGACACAAGAGAGAAAAGGGTTTTATTGATGTCATTAAAAGCTGGTGGTGTTGGCTTGAACTTGACTGCAGCTTCAAATGTTTTTCTTATGGATCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGGATTCATCGTATTGGGCAAAAGAGAAGGGTTACCGTAAGAAGATTCATCGTTAAGGGCACAGTGGAAGATCGGTTGCAACAAGTGCAAGCAAAGAAACAGAGGATGATATCTGGTGCCCTCACAGATGATGAGGTTCGGACTTCAAGGATTCAAGACCTCAAAATGCTATTCTCATAG 3414 0.4265 MENDNVVVVNGNRVLVAQPLTVLRALTSTGGARVLATPPNMNPNSDDSDVCKTPMIKVKDEPQEEEVKTVSVGSHSEAVTDVRHSMHSVDDSLKSTNTKVASVGESLKSMKDEPTVQMTENRAAVDVVGETQKSVKVESVDESLKPMEVEPRIRSMEEVNNVDCETHGSVKVEPVQKTTSVQAKEGSDNQTLSNEVEALKVVNKEKQSVSDDVQVLKVVKKEPVEEKKIPIPNLEDGEFPVEPGWSLLGRKIEVATSTARGLRRLVDNEIVHFIFPNPHTSYKFQWIVRVETKRSGVVGRLPMEWAKAVIPLVQSGNVKVRGRCIATPNKLEMMQDIMLLVSFYVHHSVFSECVDTSWKLEACGTINSTAYPLLTLLNMLEIEPHRKADFTPEEMKARKRILKLDSDEASALHVTKRRKGVSEPLPEPNENEQALSESALNKLVGAAEVFDLEEMEAPSTLMCCLKPYQSQALYWMTEIEKGGDDENAERNLHPCWSAYNICNGKTIYVNIFTGEAAKKFPQATQMARGGILADAMGLGKTVMTIALILSNPGRVNDNIFTNKRRNIDSSYKVEGGTLIVCPMALLGQWKDELETHSKSGSISIFVHYGGGRTTNPDLLSEYDVVLTTYGVLSASYKSEGENSIYHRVQWFRVVLDEAHHIKAHKSQVAQAAITLSSQCRWCLTGTPLQNSLEDLYSLLSFLRVEPWCNWQWWTKLIQKPYEHGDQRALKLVKGVLRTLMLRRTKETKDNEGRPILVLPPTDIQLIECEQSESERDFYDALFLRSKVQFEQYVAQGKVLNHYANILDLLMQLRRCCNHPLLVMCGSVPEKYADLSRLARKFLESHTESSNICHESDSQQNAKMNKLASRFLQNSDASHSVQSREYIDEVLGHIQKGETVECSICMESPDDPVLTPCAHQFCRECLFNCWGTSMGGKCPICRQSLKKSDLVVLQSESPFEVDIENNLTESSKVSRLFDFLEHIQKTSDEKSIVFSQWTSFFDLLENPLKRRGIGFLRFDGKLTQKQREKILKEFNDTREKRVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRRVTVRRFIVKGTVEDRLQQVQAKKQRMISGALTDDEVRTSRIQDLKMLFS 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02579 1137 Pfam Helicase conserved C-terminal domain 972 1084 IPR001650 -
Car04g02579 1137 Gene3D - 759 891 IPR027417 -
Car04g02579 1137 Gene3D - 949 1136 IPR027417 -
Car04g02579 1137 ProSiteProfiles Zinc finger RING-type profile. 901 941 IPR001841 -
Car04g02579 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 743 IPR027417 -
Car04g02579 1137 ProSitePatterns Zinc finger RING-type signature. 916 925 IPR017907 -
Car04g02579 1137 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 521 705 IPR014001 -
Car04g02579 1137 SUPERFAMILY RING/U-box 900 946 - -
Car04g02579 1137 SMART ring_2 901 940 IPR001841 -
Car04g02579 1137 Pfam Zinc finger, C3HC4 type (RING finger) 899 946 - -
Car04g02579 1137 Pfam SNF2-related domain 468 821 IPR000330 GO:0005524|GO:0140658
Car04g02579 1137 Pfam HIRAN domain 261 339 IPR014905 GO:0003676|GO:0008270|GO:0016818
Car04g02579 1137 SMART helicmild6 1001 1084 IPR001650 -
Car04g02579 1137 CDD SF2_C_SNF 967 1095 - -
Car04g02579 1137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 892 948 IPR013083 -
Car04g02579 1137 SMART ultradead3 461 724 IPR014001 -
Car04g02579 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 756 1128 IPR027417 -
Car04g02579 1137 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 974 1137 IPR001650 -
Car04g02579 1137 CDD DEXDc_SHPRH-like 465 743 - -
Car04g02579 1137 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 408 1136 - -
Car04g02579 1137 PANTHER DNA REPAIR PROTEIN RAD5B 408 1136 - -
Car04g02579 1137 Gene3D - 515 744 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02579 Car-Chr4 48941256 48947544 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02579 56 1136 RAD5 or RAD16-like Gene Family AT5G43530 53.791 0.0 1159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car04g02579 SNF2_N 9.7e-83 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02579 K15505 - gmx:100806677 1481.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02579 04 48941256 48947544 Car04g02579 04 48941256 48947544 ECH