Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02560 ATGTATTGGCATGGAGTGATGGCTGGCCAAATGGGTCATATGGAGGAAGAGGTATGGAGGAAGGGACCATGGACTGGTGAAGAAGATAGGTTGCTTATTGATTATGTTAGGATGCATGGTGAAGGAAGATGGAACTCTGTTGCTAGGCTTACTGGATTAAAAAGGAATGGAAAGAGCTGCAGATTAAGATGGGTGAATTACCTAAGACCAGATCTCAAAAGGGGTCAAATAACACCACAAGAAGAGAGCATAATTTTAGAACTGCATGCTAGATGGGGAAACAGGTGGTCAACAATCGCTAGAAATTTACCGGGAAGAACGGACAATGAAATAAAGAATTATTGGCGGACTCATTTCAAGAAAAAGGCAAAAAATCCCTCTGACGCTGCAGAAAAGGCGAAAAATCGATTCATGAGGAaacaactatttcaccaacaacaacaacaattgcaacaacaacaacaaTTTAACTTAGACATGAAAAGTGTGATGTCCTTGGTTGAGGAAAATAATATTAATAACTATAGAGTGCCTTATATATCTCAAGCTAGACAAGAAATGTTTAATATGTGTCCTAACAACATAGAAGAGCAGGGTTACTTTATGCTTAATGGAAACTCTTCTGTACCTGAGGCATCAGTTGAAGATATTTTGTGGGATGGACTTTGGAATTTGGATGATGTTCATGGCAATTTTAGTGTTGCTAATGCAACAAACAAAAATGGCCTATACAATTTAGTTTCTCCCTATTGCTAA 756 0.3624 MYWHGVMAGQMGHMEEEVWRKGPWTGEEDRLLIDYVRMHGEGRWNSVARLTGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARNLPGRTDNEIKNYWRTHFKKKAKNPSDAAEKAKNRFMRKQLFHQQQQQLQQQQQFNLDMKSVMSLVEENNINNYRVPYISQARQEMFNMCPNNIEEQGYFMLNGNSSVPEASVEDILWDGLWNLDDVHGNFSVANATNKNGLYNLVSPYC 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02560 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 68 IPR017930 -
Car04g02560 251 PANTHER MYB TRANSCRIPTION FACTOR 4 242 - -
Car04g02560 251 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 242 IPR044676 GO:0003700|GO:0006355|GO:0043565
Car04g02560 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Car04g02560 251 SMART sant 73 121 IPR001005 -
Car04g02560 251 SMART sant 20 70 IPR001005 -
Car04g02560 251 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Car04g02560 251 Pfam Myb-like DNA-binding domain 74 118 IPR001005 -
Car04g02560 251 CDD SANT 23 68 IPR001005 -
Car04g02560 251 SUPERFAMILY Homeodomain-like 20 115 IPR009057 -
Car04g02560 251 Gene3D - 78 157 - -
Car04g02560 251 ProSiteProfiles Myb-like domain profile. 20 68 IPR001005 -
Car04g02560 251 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Car04g02560 251 CDD SANT 78 119 IPR001005 -
Car04g02560 251 Gene3D - 21 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02560 Car-Chr4 47982277 47983976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02560 16 251 MYB Transcription Factor Family AT3G24310 57.812 3.16e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car04g02560 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02560 K09422 - gmx:100795981 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02560 04 47982277 47983976 Car04g02560 04 47982277 47983976 ECH