Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02557 ATGGCTACTGCTGCTACTGGCATAGCCTCCTTCTTTTCATCTTCCATCAACGCTTCTGTCAAATGTCTTCGTTACAAAAACTGCATGTTTGCATCTGTTATGTCACATTCTTCCTATTCTTCCTCACTTGAGCCTTTATCCATTACTACACTTACACACAAGTTATGGCTTCCTAGAATTTCTGTTGCTGTTGCACAGGAAGAAGTGGTTGTAGCTGCTgaagagaatgctgaagaagtagaagtagaagaagagaaggaacaaggaggggaaattgtagcagaagaagaCACAAGGACTAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCACAACTTGCAGGGTTAATTGAGGATTATGGTAGTGCTGAACTAATTGAGGTTCTTTATGACAGGGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGTATTGAAGATTGCAAAGCAGTAATAGAAAATCTAGATGGAAATGAGTTCTTGGGGCGAACCCTGCGTGTGAACTTCTCTGACAAACCGAAACCAAAAGAACCATTGTATCCTGAAACTGAATACAAGCTTTTTGTTGGGAACTTGTCATGGACAGTAACTTCTGAGAGTCTAACACAAGCCTTTCAAGAATATGGAACTGTTGTTGGAGCTAGGGTGTTATATGATGGCGAAACCGGAAAATCTCGTGGCTATGGCTTTGTTAGCTATGGCAGTAAATCAGAAATGGAAGCTGCCCTTTCATACATGAATAATGTGGAACTAGAAGGACGAGCATTGCGCGTAAGCTTGGCTCAAGGAAAACGTTGA 816 0.375 MATAATGIASFFSSSINASVKCLRYKNCMFASVMSHSSYSSSLEPLSITTLTHKLWLPRISVAVAQEEVVVAAEENAEEVEVEEEKEQGGEIVAEEDTRTKLYFGNLPYSVDSAQLAGLIEDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCKAVIENLDGNEFLGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLSWTVTSESLTQAFQEYGTVVGARVLYDGETGKSRGYGFVSYGSKSEMEAALSYMNNVELEGRALRVSLAQGKR 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02557 271 Coils Coil 63 83 - -
Car04g02557 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 178 IPR000504 GO:0003723
Car04g02557 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 172 IPR000504 GO:0003723
Car04g02557 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 263 IPR000504 GO:0003723
Car04g02557 271 PANTHER OS02G0815200 PROTEIN 11 270 - -
Car04g02557 271 SUPERFAMILY RNA-binding domain, RBD 93 184 IPR035979 GO:0003676
Car04g02557 271 Gene3D - 181 271 IPR012677 -
Car04g02557 271 Gene3D - 63 180 IPR012677 -
Car04g02557 271 SUPERFAMILY RNA-binding domain, RBD 184 270 IPR035979 GO:0003676
Car04g02557 271 PANTHER OS02G0815200 PROTEIN 11 270 - -
Car04g02557 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 269 IPR000504 GO:0003723
Car04g02557 271 SMART rrm1_1 101 174 IPR000504 GO:0003723
Car04g02557 271 SMART rrm1_1 192 265 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02557 Car-Chr4 47838323 47842053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02557 91 270 Eukaryotic Initiation Factors Gene Family AT2G23350 32.990 1.49e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02557 - - aprc:113871254 347.436