Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02556 ATGACAACAATCAGTCTCCGGAAGGGAAACACACGTCTTCCACCGGAAGTTAACCGCGTCCTCTACGTTCGCAACCTTCCCTTCAACATAACAAGCGAAGAAATGTACGATATATTCGGCAAATACGGTGCTATTCGTCAGATCCGAATCGGAACTAACAAAGACACGCGCGGCACCGCTTTTGTCGTTTACGAAGACATTTACGACGCTAAAACTGCCGTCGATCATCTCTCTGGTTTCAATGTCGCTAATCGATATCTCATCGTTCTTTATTATCAGCATGCTAAGATGAGTAAGAAGTTTGATCAGAAGAAGAAGGAATTTCGTAAATTTTATTGA 339 0.4277 MTTISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKKEFRKFY 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02556 112 SMART rrm1_1 20 90 IPR000504 GO:0003723
Car04g02556 112 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 87 IPR000504 GO:0003723
Car04g02556 112 PANTHER SPLICING FACTOR 3B SUBUNIT 6 5 105 - -
Car04g02556 112 CDD RRM_SF3B14 17 93 IPR034150 -
Car04g02556 112 Gene3D - 5 108 IPR012677 -
Car04g02556 112 PANTHER SPLICING FACTOR 3B 5 105 - -
Car04g02556 112 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 94 IPR000504 GO:0003723
Car04g02556 112 SUPERFAMILY RNA-binding domain, RBD 7 103 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02556 Car-Chr4 47823401 47823739 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02556 21 111 Eukaryotic Initiation Factors Gene Family AT1G71770 31.183 2.24e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02556 K12833 - han:110904388 204.142