Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02555 ATGACAACAATCAGTCTCCGGAAGGGAAACACACGTCTTCCACCGGAAGTTAACCGCGTCCTCTACGTTCGCAACCTTCCCTTCAACATAACAAGCGAAGAAATGTACGATATATTCGGCAAATACGGTGCTATTCGTCAGATCCGAATCGGAACTAACAAAGACACGCGCGGCACCGCTTTTGTCGTTTACGAAGACATTTACGACGCTAAAACTGCCGTCGATCATCTCTCTGGTTTCAATGTCGCTAATCGATATCTCATCGTTCTTTATTATCAGCCAATGTCGCTATCGATATCTCATCGTTCTTTATTATCAGCATGCTAA 327 0.4434 MTTISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPMSLSISHRSLLSAC 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02555 108 PANTHER SPLICING FACTOR 3B SUBUNIT 6 5 95 - -
Car04g02555 108 SMART rrm1_1 20 90 IPR000504 GO:0003723
Car04g02555 108 PANTHER SPLICING FACTOR 3B 5 95 - -
Car04g02555 108 CDD RRM_SF3B14 17 93 IPR034150 -
Car04g02555 108 Gene3D - 5 97 IPR012677 -
Car04g02555 108 SUPERFAMILY RNA-binding domain, RBD 18 97 IPR035979 GO:0003676
Car04g02555 108 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 87 IPR000504 GO:0003723
Car04g02555 108 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 94 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02555 Car-Chr4 47820682 47821008 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02555 18 102 Eukaryotic Initiation Factors Gene Family AT4G34110 31.818 4.13e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02555 K12833 - rcu:8267753 188.734