Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02549 ATGGCTACACAGATGAGCAAAAAGCGAAAGTTCGTCGCTGACGGAGTTTTTTTCGCTGAATTGAATGAGGTTTTGACAAGAGAACTTGCTGAGGATGGTTATTCTGGTGTAGAGGTTAGGGTTACCCCGATGCGCACCGAAATCATCATCAGAGCTACTCGTACCCAAGCTGTTCTTGGTGAGAAGGGAAGGAGGATTAGAGAACTTACCTCAGTGGTACAGAAGAGGTTTAAGTTTCCTGAGAACAGTGTTGAGCTTTATGCTGAGAAAGTTAACAACAGAGGACTTTGTGCAATTGCTCAGGCTGAGTCTCTTCGCTACAAGCTCCTCGGTGGTCTTGCTGTTCGCAGGGCCTGCTATGGTGTTTTGAGATTTGTCATGGAAAGTGGTGCCAAGGGTTGCGAGGTCATTGTTAGTGGAAAATTGAGAGCCCAGAGAGCCAAATCCATGAAGTTCAAGGATGGTTACATGATTTCTTCTGGGCAACCAGTCAAGGACTACATCGACTCTGCAGTGAGACATGTGCTCCTTAGACAGGGTGTTCTTGGAATTAAGGTGAAGATCATGCTTGATTGGGATCCTAAAGGTAAACAAGGTCCTAAAACTCCCCTTCCTGATATTGTCACCATTCACTCTCCAAAGGAAGAGGAAGAGTACATCCGACCTGCTGCTGTTCTGGCAAATGATATTGAGGTCCCTGTTGTTGTTGCTTAA 714 0.458 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHSPKEEEEYIRPAAVLANDIEVPVVVA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02549 237 CDD 40S_S3_KH 15 95 - -
Car04g02549 237 Gene3D - 1 91 IPR015946 -
Car04g02549 237 Pfam KH domain 20 93 IPR004044 GO:0003723
Car04g02549 237 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Car04g02549 237 Gene3D - 93 219 IPR036419 -
Car04g02549 237 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Car04g02549 237 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Car04g02549 237 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Car04g02549 237 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 232 - -
Car04g02549 237 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 232 - -
Car04g02549 237 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 211 IPR005703 GO:0003735|GO:0006412|GO:0015935
Car04g02549 237 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02549 Car-Chr4 47758248 47760794 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02549 1 233 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 87.983 1.40e-153 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02549 K02985 - gmx:100800747 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02549 04 47758248 47760794 Car04g02549 04 47758248 47760794 ECH