Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02546 ATGTTGCAAGATGTTATCCACCCTCCATCACATGATCATGACCAACTATCCATTGATGAAATTTCAAGTCCAATTAGTGCACAAATATTTGAACTTTGTGACCCTGAATTTTTTCAAGAGTCTCTACAAAATTCTGATGTTACTTCTACCTCAAATTGTTGTCATGATCAAGATAACAACAACAATAACAATTCTTCATCATATGCTATAAACATATCTCAAGCTTTAGATTTAGAAGACCATAACATcaataacaatagcaatagcaacaatagtaacaatagtaacaataacacaaatagtagcaataacaataacCTTTCAATTATCTTTGATTCTCAACAAGAAATTGACAATGACATATCAGCCTCAATAGATTTCTCATCATCACCATCTTTTCTTGTTCCACCACTTCTTCATCAAGAACAACAGCAACAATTTGATTTCTCTTCATCAAATCCTCATCAGCTTCAACAACTAACAACGTGTTCAGTTTTGAATCCTATAGCTGCATCGGCGCCTCTTATCGGTGTTCCGTTCGCTTCGGTTTTTGAAGATGATTGCATATCTTCAATCCCTTCTTATGTTCCTATTAACCcttcttctgtttcttcttcttcaccttcttcttgttcttATCTTAGTTCTGGATTAGGTGTGTACATGCCTCATCATCATGGTAACCTTAGTTCTGCTTTGTCTGCTGATAGTTCTAGCTTGTTTGGTGGAACCATTCTGTTAGGTTCTGATATTCAGACTCAAGAGTTGGATTATCAAGGTGAAAATGGTGGAATGTATTGTACAGATTCTAAATTGATCTTTAATTTTGATATTTTGTTAAAGGCACTTGGTAGTGAAAGTCACAATTTGGTAACTGGAGCTGGGAATTCTGCCAATTTGGCACCAGAAATCTCACACTTGGAGGACTCTACCTTAAAGGTTGGAAAACTCTCTGTTGAGCAAAGGAAAGAGAAGATTCATAGATACATGAAGAAGCGAAATGAAAGAAATTTCAGCAAAAAAATTAAGTATGCTTGTCGAAAAACTTTAGCGGATAGCCGACCGCGAGTTAGAGGAAGATTTGCAAAGAATGATGATTTTGGTGAGACTCATAGACCAACTTGTAGCAACCATGAAGATGATGATGAAATAGCTGTGAAAGAAGAAGATGATATGGTTGATTCCTCAGACATCTTTGCCCATATTAGTGGACTTAACTCCTTCAAATGCAACTATTCCATCCAATCCTTGATTTGA 1257 0.3325 MLQDVIHPPSHDHDQLSIDEISSPISAQIFELCDPEFFQESLQNSDVTSTSNCCHDQDNNNNNNSSSYAINISQALDLEDHNINNNSNSNNSNNSNNNTNSSNNNNLSIIFDSQQEIDNDISASIDFSSSPSFLVPPLLHQEQQQQFDFSSSNPHQLQQLTTCSVLNPIAASAPLIGVPFASVFEDDCISSIPSYVPINPSSVSSSSPSSCSYLSSGLGVYMPHHHGNLSSALSADSSSLFGGTILLGSDIQTQELDYQGENGGMYCTDSKLIFNFDILLKALGSESHNLVTGAGNSANLAPEISHLEDSTLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGETHRPTCSNHEDDDEIAVKEEDDMVDSSDIFAHISGLNSFKCNYSIQSLI 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02546 418 Pfam CCT motif 322 364 IPR010402 GO:0005515
Car04g02546 418 MobiDBLite consensus disorder prediction 81 106 - -
Car04g02546 418 ProSiteProfiles CCT domain profile. 322 364 IPR010402 GO:0005515
Car04g02546 418 PANTHER CCT MOTIF FAMILY PROTEIN 18 418 - -
Car04g02546 418 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 18 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02546 Car-Chr4 47550936 47556068 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02546 301 370 C2C2-CO-like Transcription Factor Family AT5G24930 40.000 6.47e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car04g02546 CCT 5.5e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02546 - - gmx:100793417 457.988