Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02515 ATGATGGATTCTCGAAAAATATCCACATTTAAAGTCAAACAAATGCCTCCTCCCTTGAAAGATTCAAATATTATGTCGAGAAAATTGCGCATAATTTATGATGATTCTGATGCAACTGATTCATCCGAAGATGAGTCAAAGTCTAAAAGAATAAAGAGAAGTTTTATAGACATCCCTCTACCATGTGTATCTACGTCTTTCTCCTCTGAAAATAACTTCTCCGAGAAAACAAATATTACAAAGAAGAAGAATTGTCTAACGCAACCTAAAAAAAAGAAGAAGGTACTTCCATCAACAATTGCAACACCAACCCCAACAAGGAGACAATCTTCTCCCAGATATCGAGGTGTTCGTATGAGAAAGTGGGGAAAATGGGCGGCTGAAATTCGTATTCCAACAACAACCACTCGAATTTGGTTAGGAACTTTCAACACTCCTGAAGAGGCTTCTCAAGCCTATGAAGCCAAACGACTTCAATTAGAACTTGAAGCAAAATCAAATGCTAAAGAATGCATCAATGTTAATGGTGATGGTTCTTCTACTCTTGAAAATAACAAGAGTAATTACTTAAACTCTTCTACTGCAGATTTTGATGTTGCTACTACATCATCTATCTTTGATAAATTCTCAACTTCTAAAGACTCTGAGAGGTTATTCTCACACACATCACCTTCTTCTGTGCTTGAGTTGAATACACCAACTTACAATTTGATTGAGAAGGTTGATGTTTCATCAAACAGTGAAGTCATTGAAAAAGATGCTGAAGAGGCCTGTGATTTTGTAGCTTATCAACTAGAAGAGCTAGAAATACCAGATCTTGGAGTTTTGGAATTTCCTGAACCATCTGCTACTCCTGAGGCTCGAGCGGATCCCAACCTTGGGTTTGGATTTGATTTTGGAAGGGTTCATGACTATGGACATGGTTTTGACGAACATGGTGACTTCAACGATATTCACATTCATGGGTTTGATGACAATGAGCCTAGCAAGCTTCCGGATTATGATTTTGACGAGGATGATGAATTTTCCGGTTGGATTGAAAGAATCCCATTCTATCATTTAAGATTATAG 1071 0.3744 MMDSRKISTFKVKQMPPPLKDSNIMSRKLRIIYDDSDATDSSEDESKSKRIKRSFIDIPLPCVSTSFSSENNFSEKTNITKKKNCLTQPKKKKKVLPSTIATPTPTRRQSSPRYRGVRMRKWGKWAAEIRIPTTTTRIWLGTFNTPEEASQAYEAKRLQLELEAKSNAKECINVNGDGSSTLENNKSNYLNSSTADFDVATTSSIFDKFSTSKDSERLFSHTSPSSVLELNTPTYNLIEKVDVSSNSEVIEKDAEEACDFVAYQLEELEIPDLGVLEFPEPSATPEARADPNLGFGFDFGRVHDYGHGFDEHGDFNDIHIHGFDDNEPSKLPDYDFDEDDEFSGWIERIPFYHLRL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02515 356 CDD AP2 112 155 IPR001471 GO:0003700|GO:0006355
Car04g02515 356 ProSiteProfiles AP2/ERF domain profile. 113 175 IPR001471 GO:0003700|GO:0006355
Car04g02515 356 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 334 - -
Car04g02515 356 MobiDBLite consensus disorder prediction 88 115 - -
Car04g02515 356 MobiDBLite consensus disorder prediction 1 21 - -
Car04g02515 356 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
Car04g02515 356 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 12 334 - -
Car04g02515 356 SUPERFAMILY DNA-binding domain 113 160 IPR016177 GO:0003677
Car04g02515 356 Gene3D AP2/ERF domain 113 170 IPR036955 GO:0003700|GO:0006355
Car04g02515 356 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Car04g02515 356 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Car04g02515 356 SMART rav1_2 113 169 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02515 Car-Chr4 46280082 46281152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02515 27 336 AP2-EREBP Transcription Factor Family AT1G68550 31.013 1.41e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car04g02515 AP2 1.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02515 - - mtr:MTR_1g105400 277.33