Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02504 ATGGAAGCCCTTGGTTCCGTGGACGACCTCTTGGATTTCTCATCTGACATAGGTGAGGATGTTGATGACAAACCTAGGAAAGCCTTTCCTTCACTTAAACCAAAATGCAGTGATCCATCTTCACTTAATCCATTGGACCTCAGTGATCCTAACCATTCATTTTCTGAGTTTGTAGAAGAGGAGCTTGAATGGCTATCCAACAAAGATGCATTTCCGTCAGTCGAAACATTTGTTGACTTACCGTCTATTCAACCCTTTATTTCGAAGAATCAAAGGACGACCCCAATGCTTGAGTACagcacaagcagtagcaacagtaataacagtaccaacagcaTTTCCCTCTTAAGTGGCTATGATCACATGAAGTTCCCTGTCCGTGCACGGAGCAAGTCTCGAAGTAGGCCTCGCATTGGCATTGCTGAAACCTCCAATCAGCAATTTTCTTGGAGACAACCGTGTAACAAAATTTCCAAAGACCAAGGGATGCAAATCTCAACCATTGGGAGAAAATGTCATCACTGTGGAGCCGAAAGTACTCCACAATGGCGGGCAGGTCCCAATGGTCCGAAAACACTTTGTAATGCATGTGGGGTTAGGTATAAGTCTGGCCGACTTGTACCTGAATACCGCCCTGCAAATAGCCCAACTTTTCGCCGAGAATTGCACTCTAATTCCCACAGGAAAGTGTTGGAGATGAGAAAGAAGAAGCAAACGGGAACAGGTTGA 729 0.4266 MEALGSVDDLLDFSSDIGEDVDDKPRKAFPSLKPKCSDPSSLNPLDLSDPNHSFSEFVEEELEWLSNKDAFPSVETFVDLPSIQPFISKNQRTTPMLEYSTSSSNSNNSTNSISLLSGYDHMKFPVRARSKSRSRPRIGIAETSNQQFSWRQPCNKISKDQGMQISTIGRKCHHCGAESTPQWRAGPNGPKTLCNACGVRYKSGRLVPEYRPANSPTFRRELHSNSHRKVLEMRKKKQTGTG 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02504 242 CDD ZnF_GATA 171 220 IPR000679 GO:0006355|GO:0043565
Car04g02504 242 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 230 - -
Car04g02504 242 MobiDBLite consensus disorder prediction 13 48 - -
Car04g02504 242 MobiDBLite consensus disorder prediction 17 31 - -
Car04g02504 242 PANTHER GATA TRANSCRIPTION FACTOR 1 7 238 - -
Car04g02504 242 Gene3D - 166 219 IPR013088 GO:0006355|GO:0008270
Car04g02504 242 ProSitePatterns GATA-type zinc finger domain. 172 197 IPR000679 GO:0006355|GO:0043565
Car04g02504 242 ProSiteProfiles GATA-type zinc finger domain profile. 166 202 IPR000679 GO:0006355|GO:0043565
Car04g02504 242 PANTHER GATA TRANSCRIPTION FACTOR 7 238 - -
Car04g02504 242 Pfam GATA zinc finger 172 205 IPR000679 GO:0006355|GO:0043565
Car04g02504 242 SMART GATA_3 166 216 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02504 Car-Chr4 46031180 46034983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02504 59 242 C2C2-Gata Transcription Factor Family AT3G24050 47.685 1.94e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car04g02504 GATA 6.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02504 - - gmx:100784527 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02504 04 46031180 46034983 Car04g02504 04 46031180 46034983 ECH