Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02497 ATGGAGGAGAATATGGAATTTGTTCATATTGCGGATGTTCCTGATACTCCGGATAGATCAAATGCTGGGAACAATGATGTTCCTGATACTCCGGATAGATCAAATGCTGGGAACAATGATCGAAAATGCGTTGGTAATCTTGAGAAGAGGGAGAAGGGTTTTCCTGTTACTGATGAAATAAGTAACTGCAGCAACTATATAATATTGTCCCCAGATAAACCTTATCCTTCTCAGAAGGGTCCCATCTTTAGGAGAGCTCAAACTGAGAAAGTTTTTGGACTTGGGACATCACGCTCTAGTGGAGCTGAAAAGATGGAGAAAGGGAAAACTATAAGCTCTAAGATTCCTTCTATGTCATCTCACCATGGGCATATTTCTGTTTTTGATTTGACTGAAGAGAGTGGACAGTTCCAACAACCAAAATCAGCTTTCTCACATTGTGGATCGAGAGATAACACAATTGAAGACAAGAAAGAATTGAAAGCAAGTATTGGGAGTTCTTCAACCTCGGGTAGACCTCATCCTTCTCAAAATGCTCCCATCTTTAGGAGAGCTCAAACTGAGAAAGTTTTTGGATTTGGGACATCACACTCCAAAGTTGAAAAGATGGAGAAAGGGAAAACTGTAAGCTCTAAGATTCCTCCTAAGTCATCTCACGGGCGTATTCCTGTTTTAGATTTGACTGAAGAGAGTGGAAAGTTCCAACAACCAAAACCAGCTCTCTCACATTGTGGATCAAGAGATAACATGATTGAAGACAAGAAAGAATTGAAAGCAAGTATTGGGAATTCTACGTTACCATTAATCACCGATTCTTCTAATACATCAAGAGATGCCTTCACTGGAAAGTGTAAATTAGATGACAAAACACTTCCAGGTCCTAATATATTTATGGACCGTGGCAAGAGTATTTCTCTGTTTAATGATTCACAATCTCAATCGAAAGCTGAAAAACATGTTTCTTTGCCTTCTCGTCTCTCCACTGCTCCAATAGGTAGAGGGCACAAGAGATTGGTAAGAAATGGGTGCATTTCACCTCAAAATATTGCAACTAGGGCAAAACAATCAGCTGAACAGAGCAGCCTTCAAACCAATAATGTGGCACAGATCCGTGCTGGGCATTCAGTTTCTAGCAATACAACATCTCAAATTAGTGTTGGTGATATAGTTGCTGAAGAGAGAGGTAGTGGTAGAGTGAAAGGAAAGGGAGTACTTGTTCATCCTTCATCCCATGGAACTAATGCTGGAGCTATTCACACTGATAGCAGCCCTGCGATCAATTATGAAGAGGCCAGTGGTACCAGTAATAATTCAAGAAATTCATTTGAAAACTGGGAGAGACAAGGTGGTTGGAGAAATTATAATGTTGGAAGATTTATTAACAGGCAGAATATAAACAGACCGGACAGAAGTTACACTGAGAGCAGTCAAAGTGGCCACGGTGTTCCTGGTTCTCTATCTCATCATACACCTCAACCAGCCTCACTGATTAATCCAGAGGTAGGTCAGTCAACTACACCTCATCCTACTGCTGACTCACTGACCAAAAGGCAAAGGAAACGTGAATCATCTTCTAGAAATTCTAGTGAAGCATCTCATAGTTCTAAAACTATAATTGGAAATTCATCTGGGGAAGCATCATGTTCATCATGGAACCGTGTCTTGGATCCTGAATTAGATGAGTTGTTTACCATACCAAGTTTCACTAATGGACTTAATGAAGGTTTAAATGACATTGGCAACAATAGTTCGGATGCTCGGGCAAGGCAATTAGAAGCAGATGAGATATTGGCACGTGAACTCCAAGAACAACTGTATCATGATTTTGAAGGCAGTGGGATGGATGAACATTTAGCTTGGCAGCTGCAGCATGCAGGGGATCTTCTGCATACATCAATTGATAGTCACGAGATACCTCATCCTGCACGGATTCCAAGGGAAAATAGACAGCCTCGTTCACGACCTCATCAAGATCCTTCAAATAGGAGGAGAACTGTGCCTCAAGTTCCTCATACTAATAGAATTTCACAGTTGAGGAGTCGCATGACAACTCGGTCGTCAAGACCTGCCATATCATCTAGAGGAAGGCGCCCTCGGTTTCCTCTAGATATGGACCTAGACATGAGACTTGATATATTGGAAGCATTAGAGGATGCAGTAGGGGATTTTAATGATATGGGAATGGCTGATGACATCCTTAATGCTCATCGTGATTTCAATGAAGATGACTATGAAATGTTATTGGCCCTTGACGATCACAATCACCAGCATACTGGTGCATCTGTCAATCAAATCAATAGCTTGCCACAGTCCACCATCCAGACTGACAACTTCATAGAGGATTGTGCCATATGTCTTGAGACCCCAGCCAAGGGAGAAATTATTCGCCACCTTCCTTGTTTGCATAAATTTCACAAAGACTGTATTGATCCTTGGCTTGGTAGGAAGAAGTCGTGCCCGGTGTGCAAGTCATCTATCACCTAA 2484 0.4159 MEENMEFVHIADVPDTPDRSNAGNNDVPDTPDRSNAGNNDRKCVGNLEKREKGFPVTDEISNCSNYIILSPDKPYPSQKGPIFRRAQTEKVFGLGTSRSSGAEKMEKGKTISSKIPSMSSHHGHISVFDLTEESGQFQQPKSAFSHCGSRDNTIEDKKELKASIGSSSTSGRPHPSQNAPIFRRAQTEKVFGFGTSHSKVEKMEKGKTVSSKIPPKSSHGRIPVLDLTEESGKFQQPKPALSHCGSRDNMIEDKKELKASIGNSTLPLITDSSNTSRDAFTGKCKLDDKTLPGPNIFMDRGKSISLFNDSQSQSKAEKHVSLPSRLSTAPIGRGHKRLVRNGCISPQNIATRAKQSAEQSSLQTNNVAQIRAGHSVSSNTTSQISVGDIVAEERGSGRVKGKGVLVHPSSHGTNAGAIHTDSSPAINYEEASGTSNNSRNSFENWERQGGWRNYNVGRFINRQNINRPDRSYTESSQSGHGVPGSLSHHTPQPASLINPEVGQSTTPHPTADSLTKRQRKRESSSRNSSEASHSSKTIIGNSSGEASCSSWNRVLDPELDELFTIPSFTNGLNEGLNDIGNNSSDARARQLEADEILARELQEQLYHDFEGSGMDEHLAWQLQHAGDLLHTSIDSHEIPHPARIPRENRQPRSRPHQDPSNRRRTVPQVPHTNRISQLRSRMTTRSSRPAISSRGRRPRFPLDMDLDMRLDILEALEDAVGDFNDMGMADDILNAHRDFNEDDYEMLLALDDHNHQHTGASVNQINSLPQSTIQTDNFIEDCAICLETPAKGEIIRHLPCLHKFHKDCIDPWLGRKKSCPVCKSSIT 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02497 827 MobiDBLite consensus disorder prediction 163 183 - -
Car04g02497 827 CDD RING-H2_PA-TM-RING 781 823 - -
Car04g02497 827 MobiDBLite consensus disorder prediction 638 661 - -
Car04g02497 827 MobiDBLite consensus disorder prediction 465 547 - -
Car04g02497 827 MobiDBLite consensus disorder prediction 18 41 - -
Car04g02497 827 MobiDBLite consensus disorder prediction 413 444 - -
Car04g02497 827 Pfam Ring finger domain 781 823 IPR001841 -
Car04g02497 827 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 586 825 - -
Car04g02497 827 MobiDBLite consensus disorder prediction 638 699 - -
Car04g02497 827 MobiDBLite consensus disorder prediction 1 46 - -
Car04g02497 827 MobiDBLite consensus disorder prediction 513 527 - -
Car04g02497 827 SMART ring_2 782 822 IPR001841 -
Car04g02497 827 MobiDBLite consensus disorder prediction 662 691 - -
Car04g02497 827 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 748 827 IPR013083 -
Car04g02497 827 SUPERFAMILY RING/U-box 766 826 - -
Car04g02497 827 MobiDBLite consensus disorder prediction 160 222 - -
Car04g02497 827 MobiDBLite consensus disorder prediction 528 547 - -
Car04g02497 827 ProSiteProfiles Zinc finger RING-type profile. 782 823 IPR001841 -
Car04g02497 827 MobiDBLite consensus disorder prediction 465 512 - -
Car04g02497 827 PANTHER - 586 825 - -
Car04g02497 827 MobiDBLite consensus disorder prediction 408 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02497 Car-Chr4 45867175 45876968 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02497 136 827 C3H Transcription Factor Family AT1G04790 31.994 3.69e-71 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02497 - - cam:101513161 1645.17