Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02491 ATGGAGGTTTCTTCTGCAAAATGGGTCCTCAATGTTTGTTTCTTGTTGTTGCTTTTTGTTCTTCTAGTTGAAGAAAAAGCTATGGCTTCACCACAGATCTCTCAGTCTCAGCTCAGCAATGTTGAAGTTGAGACACACAGGTTACAAAGCTTTAACGATTCATCAATGGCTGCAAGGGCAAAAGAGGTTGAAAAATTGAATGAGCGTGCTGCGGTAGCTGATCCAGAGGTGGTGGCTTCTATGGTTGAAATGCACATACAGAACAACACCCAAAGAAGGAACCTTGGATTTTTCTCTTGCGGAACAGGTAACCCAATCGATGATTGCTGGCGTTGCGACCCGAATTGGCAACGCAACAGAAAGCGTCTTGCAGACTGTGGTATTGGTTTCGGTAGAAATGCCATCGGTGGTCGCGATGGAAAGTTCTATGTTGTAACTGACCCAAGTGACAACGACGCTGTTAACCCAAGACCAGGAACTTTGCGCCATGCCGTGATCCAAGATAGGCCACTTTGGATTGTGTTCAAAAGAGACATGGTTATTCAGTTGAAACAAGAGCTTATTGTGAACAGTTTCAAGACCATTGATGGAAGAGGATCCAATGTTCACATTGCTAATGGAGGGTGCATTACAATTCAGTATGTTACTAATGTTATCATACATGGTCTTCACATTCATGATTGTAAACCAACTGGAAATGCTATGGTCAGAAGCTCTGAATCACATTTTGGTTGGAGGACTATGGCTGATGGTGATGCTGTCTCTATATTTGGAGCAAGTCACATTTGGGTTGATCATAATTCTCTGTCTCATTGTGCTGATGGTCTTGTTGATGCAGTCATGGGATCAACAGCTATAACAATTTCTAATAACCATTTCACCCATCACAATGAGGTGATTCTGTTGGGACATAGTGACTCCTACACAAGAGACAAGCAAATGCAAGTGACCATAGCTTATAACCATTTTGGAGAGGGACTTATCCAGAGAATGCCACGGTGTAGACATGGATATTTCCATGTGGTGAACAATGACTATACTCACTGGGAGATGTATGCTATTGGTGGAAGTGCTAACCCCACAATCAACAGCCAGGGGAACAGATATAATGCTCCTACTAACCCTTTTGCGAAAGAGGTGACTAAGAGAGTGGAAACAGCTGAAAGCCAGTGGAAAGGTTGGAATTGGAGGTCAGAGGGAGATTTATATCTAAATGGTGCTTACTTCACAGCATCTGGAGCTGGAGCTTCAGCTAGTTATGCAAGAGCCTCAAGCTTAGGAGCAAAATCTTCAGCTATGGTTGGTACCATAACTTCTAATGCTGGTGCACTAGGTTGCAAAAGAGGCCGTCAGTGCTAG 1359 0.4341 MEVSSAKWVLNVCFLLLLFVLLVEEKAMASPQISQSQLSNVEVETHRLQSFNDSSMAARAKEVEKLNERAAVADPEVVASMVEMHIQNNTQRRNLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPSDNDAVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGSNVHIANGGCITIQYVTNVIIHGLHIHDCKPTGNAMVRSSESHFGWRTMADGDAVSIFGASHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPTNPFAKEVTKRVETAESQWKGWNWRSEGDLYLNGAYFTASGAGASASYARASSLGAKSSAMVGTITSNAGALGCKRGRQC 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02491 452 Pfam Pectate lyase 184 367 IPR002022 -
Car04g02491 452 PANTHER PECTATE LYASE 18-RELATED 15 449 IPR045032 GO:0030570
Car04g02491 452 PRINTS Pollen allergen Amb family signature 126 143 IPR018082 -
Car04g02491 452 PRINTS Pollen allergen Amb family signature 150 175 IPR018082 -
Car04g02491 452 PRINTS Pollen allergen Amb family signature 186 202 IPR018082 -
Car04g02491 452 PRINTS Pollen allergen Amb family signature 250 271 IPR018082 -
Car04g02491 452 PRINTS Pollen allergen Amb family signature 330 349 IPR018082 -
Car04g02491 452 PRINTS Pollen allergen Amb family signature 352 371 IPR018082 -
Car04g02491 452 PRINTS Pollen allergen Amb family signature 394 418 IPR018082 -
Car04g02491 452 PRINTS Pollen allergen Amb family signature 423 446 IPR018082 -
Car04g02491 452 SMART amb_all 178 375 IPR002022 -
Car04g02491 452 PANTHER PECTATE LYASE 15 449 - -
Car04g02491 452 SUPERFAMILY Pectin lyase-like 80 446 IPR011050 -
Car04g02491 452 Gene3D - 103 445 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02491 Car-Chr4 45573210 45579395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02491 42 452 Polysaccharide Lyase AT4G13710 80.288 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02491 K01728 - gmx:100808253 803.127