Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02478 ATGTTTGGTAACATCAAGGAGGGGAGTGCTTTTCCGAAAGGGCATTCTGTTATTTTATTGCTTTTGACTTTACTTATTTCTAGCACAGAGGGTTTGAACAAAGAGGGAAAAATCCTATTGGATCTTAAAAATGGACTTCATGATAAATATAACGTTTTGGGAAATTGGAAGTCTAGTGATGAAAATCCATGTGGATGGATAGGTGTAAATTGCAGTTATGAATATAACAGTAATGATCCAGTGGTTGTTTCTGTTAATTTGAGTTCTATGGATCTTTCTGGAACTTTAAATGCTAGTAGCATTGGGGGGCTTATAAATTTAACTTATCTCAATCTTGCTTACAATGGTTTGAATGGAAATATCCCAAAAGAGATTGGTGGGTGTTTGAGTTTGGAATATCTTTACTTGAACAATAATCAATTTGAGGGACTAATTCCTGTTGAATTAGGTAAGCTATCTGTTTTGAGAAGTTTGAATATTTGCAACAATAAACTCTCTGGTGTTCTACCGGATGAGTTTGGAAACTTGACTTCGTTGGTTGAGTTAGTTGCTTATAGCAACTTTCTCGTCGGCCCGTTGCCTAATTCTATTGGAAATCTTAAGAATCTTGAGACTTTCAGAGCTGGTGCAAATAACATTACTGGTAGTTTGCCGAAGGAAATTAGCAGATGTAAGAGCTTGGTACGTCTTGGTCTTGCTCAAAATCAGATCGAAGGGGAGATACCGAGCGAGATTGGAATGCTTGTAAGCTTAAAAGAATTGATTTTATGGGAAAACCAGTTGTCAGGAGTTGTTCCTAAAGAGCTTGGGAACTGTACCAGGCTTGAGAAACTTGCTTTATATGGGAATAATATTGTTGGACCATTACCTCAAGAGATCGGGAACCTGAAATCGTTGAAGTGGTTGTATCTTTACAGAAATAAGTTGAATGGTACCATTCCAAGGGAAATTGGAAATCTTTCTTCAGCTTTACACATTGATTTCTCAGAGAATTCTTTAGTAGGTGATATCCCTTCGGAGTTCAACAAAATTCGCGGTCTAAGTTTGCTCTTTCTCTTTGAGAACCATCTATCCGGTTTGATACCAAATGAGTTTGGTAACTTGAAGAACTTGACAAAGCTCGATCTGTCGATAAATAATCTTACTGGTCCCATTCCACTTGGCTTCCAATATTTGACGCATATGTATCAGCTGCAACTTTTTGACAACTCCCTTAGTGGTATTATTCCTCAGGGACTTGGACTTTATAGTCCTCTTTGGGTGGTTGATTTTTCTGACAACAACTTGACAGGAACGATACCTCCTCATCTATGCCGAAATTCTCATTTGATGCTGTTGAATCTTGCTGATAATCAGCTCTATGGAAACATACCAACAGGGATATTGAACTGTAAATCATTGGCACAGTTGTTGTTGGTTGGTAACAGGCTTACTGGTGGCTTCCCTTCAGAATTGTGTAAACTGGAGAACCTTACTGCCATTGATTTGAACAAGAACAGGTTCAGCGGTCCGCTTCCTCCCGAAATTGCAAACTGCCACAATCTGCAAAGGCTTCATGTTGCAGACAATTACTTCTCATTGGAGTTGCCTAAGGAAATAGGAAATCTCTCTCAATTGGTAACTTTTAATGTTTCGTCGAATCTTTTCACTGGAAGAATCCCACCTGAAATTTTTTGGTGCCAAAGGCTGCAGCGTCTCGATCTCAGTCGGAATAGTTTTACTGGTTCGTTGCCGAATGAACTTGGAACACTTCAGCACTTGGAGATTCTCAAGCTCTCAGACAATAAGTTATCTGGATATATTCCTGCAGCATTAGGAAATCTGTCTCATTTGAACTGGTTGATGATGGGTGGCAATTCATTTTTCGGCGAAATACCGCCTCAGTTGGGTTCTCTTTCAAGCTTACAGATAGAAATGGATCTCAGTTACAATAATCTTTCTGGAAGAATCCCGTCTCAGCTCGGCTATCTCAACATGCTCGAATACCTCTTTCTCAATAACAATCATTTGGATGGCGAAATTCCAAGTACATTTGGCCAGCTTTCGAGCTTGATGGGGTGTAATTTCTCATACAATAACCTCTCTGGACCCATCCCTTCAACTAAAATTTTCGAAAGTATGGTTTTAAGTAGCTTTGTTGGTGGTAACGCAGGTCTTTGCGGTACACCTATCGGTGACTGCAATAGCATTTCAGCTTCTCGGTCTGTTCCTCCGGGGAAAGGCATTGAGTCTCCTCGTGCCAAAATTGTTATGATCATTGCGGCTACTGTTGGTGGTGTTTCTCTCATTTTGATTTTGGTTCTTTTATATTTTATGAAACAACCTCGGGAGGCCATTGGTTCCTTTGCGGACACTGAAAATCCATCCCAAGATTCAGACATCTATTTGCCTCCAAAGGATGGTTTCACATTTCAAGACCTACTTGAAGCTACGAAAAGATTTCATGAAAGTTATGTTATCGGTAGCGGAGCATGTGGAACAGTTTATAAAGCAGTGATGAAATCTGGTAAAACCATTGCTGTTAAGAAGTTAGCATCTAACAGGGAAGGGAACAACATTGAGAATAGTTTCAGAGCCGAAATATCGACTCTAGGAAGGATAAGGCATCGGAATATAGTGAAGCTGTATGGTTTTTGTTATCACCAAGGTTCCAATCTTTTACTTTATGAGTACATGGAAAGGGGAAGCTTAGGTGAATTATTGCATGGTTCTGCAAGTAATTTGGAGTGGCCGACTCGATTCATGATTGCTCTTGGAGCTGCCGAAGGTCTTGCTTACTTGCATCATGACTGTAAACCAAAGATTATTCACCGTGACATAAAATCTAACAACATTCTGCTTGATGAAAATTTTGAGGCTCATGTCGGTGATTTTGGCTTGGCAAAAGTGATTGACATGCCGCAGTCGAAATCAATGTCTGCGGTTGCCGGATCTTATGGATATATTGCCCCTGAGTATGCTTATACCATGAAGGTTACAGAGAAGTGTGACATATATAGTTATGGCGTTGTGCTCTTGGAATTGCTAACAGGAGAAACACCAGTTCAGCAAATGGAGCAAGGAGGTGATCTTGTCACATGGGTGAGAAACCATATTCGGAACCATAACAACACATTGTCGTCAGAGATACTCGACAATCGTCTTGATCTTGAAGACCAAATCACAATAAATCACATGCTCACTGTTTTGAAACTTGCTTTAATGTGCACAAGTATGTCTCCTTCTAAGAGGCCGACAATGCGCGAAGTCGTGTTGATGCTCATCGAGTCTAATGAGCGAGAAGGAAACTTAACACTCACAAGAACTTGTCATGATCTTCCTTCCAAAGATAACGCATGA 3339 0.4007 MFGNIKEGSAFPKGHSVILLLLTLLISSTEGLNKEGKILLDLKNGLHDKYNVLGNWKSSDENPCGWIGVNCSYEYNSNDPVVVSVNLSSMDLSGTLNASSIGGLINLTYLNLAYNGLNGNIPKEIGGCLSLEYLYLNNNQFEGLIPVELGKLSVLRSLNICNNKLSGVLPDEFGNLTSLVELVAYSNFLVGPLPNSIGNLKNLETFRAGANNITGSLPKEISRCKSLVRLGLAQNQIEGEIPSEIGMLVSLKELILWENQLSGVVPKELGNCTRLEKLALYGNNIVGPLPQEIGNLKSLKWLYLYRNKLNGTIPREIGNLSSALHIDFSENSLVGDIPSEFNKIRGLSLLFLFENHLSGLIPNEFGNLKNLTKLDLSINNLTGPIPLGFQYLTHMYQLQLFDNSLSGIIPQGLGLYSPLWVVDFSDNNLTGTIPPHLCRNSHLMLLNLADNQLYGNIPTGILNCKSLAQLLLVGNRLTGGFPSELCKLENLTAIDLNKNRFSGPLPPEIANCHNLQRLHVADNYFSLELPKEIGNLSQLVTFNVSSNLFTGRIPPEIFWCQRLQRLDLSRNSFTGSLPNELGTLQHLEILKLSDNKLSGYIPAALGNLSHLNWLMMGGNSFFGEIPPQLGSLSSLQIEMDLSYNNLSGRIPSQLGYLNMLEYLFLNNNHLDGEIPSTFGQLSSLMGCNFSYNNLSGPIPSTKIFESMVLSSFVGGNAGLCGTPIGDCNSISASRSVPPGKGIESPRAKIVMIIAATVGGVSLILILVLLYFMKQPREAIGSFADTENPSQDSDIYLPPKDGFTFQDLLEATKRFHESYVIGSGACGTVYKAVMKSGKTIAVKKLASNREGNNIENSFRAEISTLGRIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGSASNLEWPTRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGETPVQQMEQGGDLVTWVRNHIRNHNNTLSSEILDNRLDLEDQITINHMLTVLKLALMCTSMSPSKRPTMREVVLMLIESNEREGNLTLTRTCHDLPSKDNA 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02478 1112 SMART LRR_typ_2 248 271 IPR003591 -
Car04g02478 1112 SMART LRR_typ_2 536 560 IPR003591 -
Car04g02478 1112 SMART LRR_typ_2 104 128 IPR003591 -
Car04g02478 1112 SMART LRR_typ_2 368 391 IPR003591 -
Car04g02478 1112 SMART LRR_typ_2 296 320 IPR003591 -
Car04g02478 1112 SMART LRR_typ_2 608 632 IPR003591 -
Car04g02478 1112 SMART LRR_typ_2 200 224 IPR003591 -
Car04g02478 1112 SMART LRR_typ_2 488 512 IPR003591 -
Car04g02478 1112 SMART LRR_typ_2 152 175 IPR003591 -
Car04g02478 1112 SMART LRR_typ_2 584 607 IPR003591 -
Car04g02478 1112 SMART LRR_typ_2 657 681 IPR003591 -
Car04g02478 1112 Gene3D Transferase(Phosphotransferase) domain 1 892 1103 - -
Car04g02478 1112 Gene3D Phosphorylase Kinase; domain 1 781 891 - -
Car04g02478 1112 Gene3D Ribonuclease Inhibitor 291 389 IPR032675 -
Car04g02478 1112 ProSiteProfiles Protein kinase domain profile. 814 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02478 1112 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Car04g02478 1112 SUPERFAMILY RNI-like 325 701 - -
Car04g02478 1112 SUPERFAMILY Protein kinase-like (PK-like) 791 1087 IPR011009 -
Car04g02478 1112 Pfam Leucine rich repeat 562 620 IPR001611 GO:0005515
Car04g02478 1112 Pfam Leucine rich repeat 250 309 IPR001611 GO:0005515
Car04g02478 1112 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 1098 - -
Car04g02478 1112 Gene3D Ribonuclease Inhibitor 188 290 IPR032675 -
Car04g02478 1112 Gene3D Ribonuclease Inhibitor 390 731 IPR032675 -
Car04g02478 1112 Gene3D Ribonuclease Inhibitor 31 187 IPR032675 -
Car04g02478 1112 Pfam Leucine Rich Repeat 130 152 IPR001611 GO:0005515
Car04g02478 1112 Pfam Leucine Rich Repeat 155 176 IPR001611 GO:0005515
Car04g02478 1112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 935 947 IPR008271 GO:0004672|GO:0006468
Car04g02478 1112 Pfam Protein kinase domain 815 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02478 1112 SUPERFAMILY L domain-like 35 333 - -
Car04g02478 1112 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 4 1098 - -
Car04g02478 1112 SMART serkin_6 814 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02478 Car-Chr4 44723768 44729148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02478 32 1089 Receptor kinase-like Gene Family AT5G56040 37.570 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Car04g02478 Pkinase 9.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02478 - - gmx:100805792 1826.22