Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02456 ATGTCTCACTTCGGAAGGTCAGGTCCTCCAGACATCTCTGTCACCTATTCTCTCCTCGTTCGCAACATCACGTTCCGTACAACTGCCGACGACCTATTTCCTTTGTTTGATAAGTATGGCAAGGTTTTCGACATCTTCATCCCCAAAGATCAAATGACCGGTGAGTCGAGGGGTTTTGCTTTTGTGTGTTCCAACTTTTTAAGTCGATTTCAGTTTCAATTTATTGAGATCTTAGATAGTTGTTTCATCTTCAATCACCAATACTACCTCGTACAACACTTCAACTCATCAGTTATCAACTATCATTACGATTCAGTGCAATTCCCTAACCGGTTGCACTGTGATTGA 348 0.4167 MSHFGRSGPPDISVTYSLLVRNITFRTTADDLFPLFDKYGKVFDIFIPKDQMTGESRGFAFVCSNFLSRFQFQFIEILDSCFIFNHQYYLVQHFNSSVINYHYDSVQFPNRLHCD 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02456 115 SUPERFAMILY RNA-binding domain, RBD 9 63 IPR035979 GO:0003676
Car04g02456 115 Gene3D - 15 63 IPR012677 -
Car04g02456 115 SMART rrm1_1 17 78 IPR000504 GO:0003723
Car04g02456 115 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 63 - -
Car04g02456 115 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 63 - -
Car04g02456 115 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 62 IPR000504 GO:0003723
Car04g02456 115 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 62 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02456 Car-Chr4 43849121 43855127 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02456 17 73 Eukaryotic Initiation Factors Gene Family AT3G11400 43.860 1.17e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02456 K12891 - gmx:100804370 119.012