Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02439 ATGCAACAAACCTTTGAATCCACCTTCAGTTTTTGCAACTCAAACATCCTAGAAGATCAAAACTCAATTTCTGAAAGCCTCATTATCAGTGATTACTTTAAGCATCCCCAACAATTTCCTATTAACATGTCACAAACACAAATTCCTCAAACCTCTTTCTCAAAACCTCCAAAACAATCCTCAAATCTAAGCAATAGAAAACCCTCTTTGAACATCACAATCCCTTCTTCCATAACCAAATTACCTCTCTCACAACAAAACATTGAAAAAAGTGACAAAACCAAAAATACAAAAGAAGAGGAAAAGCATTATAGAGGTGTTAGAAGAAGACCATGGGGAAAATATGCTGCAGAGATTCGTGACCCTAATAGAAAAGGATCAAGGGTGTGGCTTGGAACATTTGAAACAGCCGTAGAAGCTGCAAGGGCTTATGATAAAGCTGCTTTTCAGATGAGAGGAAGTAAAGCCATTTTGAACTTCCCTCTAGAAGTTGCTTCAATTTCTACTTGCATCAAAGTTGGTGAGAAAAGGCAAATAGATGAAGGAAGCAACTATGCTGAGATTAATAATAATAATCACAAGAAAGTGAAAAAAGAAGAAGGGGTTTCAACAATTTGTCCTTTGACTCCTTCATGTTGGAAAGGGTTTTGGGATACTGATGTTATGGGAACTATCTTTAGTGTACCTCCTTTGTCACCATTATCTCCACTCATGATGGGTTATTGA 726 0.3691 MQQTFESTFSFCNSNILEDQNSISESLIISDYFKHPQQFPINMSQTQIPQTSFSKPPKQSSNLSNRKPSLNITIPSSITKLPLSQQNIEKSDKTKNTKEEEKHYRGVRRRPWGKYAAEIRDPNRKGSRVWLGTFETAVEAARAYDKAAFQMRGSKAILNFPLEVASISTCIKVGEKRQIDEGSNYAEINNNNHKKVKKEEGVSTICPLTPSCWKGFWDTDVMGTIFSVPPLSPLSPLMMGY 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02439 241 MobiDBLite consensus disorder prediction 47 71 - -
Car04g02439 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 9 229 - -
Car04g02439 241 MobiDBLite consensus disorder prediction 83 106 - -
Car04g02439 241 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 229 - -
Car04g02439 241 CDD AP2 102 161 IPR001471 GO:0003700|GO:0006355
Car04g02439 241 Pfam AP2 domain 103 153 IPR001471 GO:0003700|GO:0006355
Car04g02439 241 Gene3D AP2/ERF domain 102 163 IPR036955 GO:0003700|GO:0006355
Car04g02439 241 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Car04g02439 241 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Car04g02439 241 SUPERFAMILY DNA-binding domain 103 163 IPR016177 GO:0003677
Car04g02439 241 MobiDBLite consensus disorder prediction 91 106 - -
Car04g02439 241 SMART rav1_2 103 167 IPR001471 GO:0003700|GO:0006355
Car04g02439 241 ProSiteProfiles AP2/ERF domain profile. 103 161 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02439 Car-Chr4 43135473 43136444 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02439 60 237 AP2-EREBP Transcription Factor Family AT5G51190 52.604 6.36e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Car04g02439 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02439 K09286 - gmx:100795866 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02277 03 68767534 68771247 Car04g02439 04 43135473 43136444 PCT