Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02435 ATGTTAGCGTTATCACCTCCTCTATTCTCAACAATTGGATGGCCCTTTGAGGAGCCTATAAGTCATAACCAGCAGGATTACTTTTACAAAGCAACCGATCAATTATTTAATTTTCATCATCTAGTTGAGGAAGAAAATTCAACTCCCTCACAAGCCACAAGCAGCGACCTTAGCATGGTCAAGAAACTTATCCACAATGCTAGTGAACGAGATCGCCGCAAGAAAATCAATACTTTGTATTCTTCACTTCGTTCACTTCTTCCTGTGGCAGAACAGATGAAGAAGTTGAGCAATCCAGCAACAATTTCACGAGTCCTAAAGTACATACCTGAGTTACAGAAGCAGGTAGAAGGACTACTTACGAGAAAGGAGGCGATTTTATTGAAACTATCTCCACAAGTAGATGAGGTGAAGAGTAAAGAATCTGAAAGGAAGAAACATAGTAAAAACTCTGGTTTTGTAGTTTCGACAAGTAGACTCAATGATAGTGAGGCTGCTATTCAGATTTCATCTTACTCCATCCACAAAATTCCATTATCTGAGATCTTGATGTGTTTAGAAAATGATGGCCTTTTGCTGCTAAATATTTCTTCCTCTCAAACCTTTGGAGGGAAGGTCTTTTATAACTTTCATTTCCAGGTGGATAAAGAACAGAGATTAGAATCCGAGATTTTCAGTGAGAAGCTCTTAGCAATAATTGAGACGAAGGGGAATTTTCAAGTCAATTGA 729 0.3841 MLALSPPLFSTIGWPFEEPISHNQQDYFYKATDQLFNFHHLVEEENSTPSQATSSDLSMVKKLIHNASERDRRKKINTLYSSLRSLLPVAEQMKKLSNPATISRVLKYIPELQKQVEGLLTRKEAILLKLSPQVDEVKSKESERKKHSKNSGFVVSTSRLNDSEAAIQISSYSIHKIPLSEILMCLENDGLLLLNISSSQTFGGKVFYNFHFQVDKEQRLESEIFSEKLLAIIETKGNFQVN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02435 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 130 IPR036638 GO:0046983
Car04g02435 242 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 235 - -
Car04g02435 242 Pfam Helix-loop-helix DNA-binding domain 62 113 IPR011598 GO:0046983
Car04g02435 242 Gene3D - 52 150 IPR036638 GO:0046983
Car04g02435 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 112 IPR011598 GO:0046983
Car04g02435 242 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 235 IPR015660 GO:0003700|GO:0006357
Car04g02435 242 SMART finulus 66 118 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02435 Car-Chr4 42941075 42942910 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02435 1 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.688 1.78e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g02435 HLH 1.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02435 - - mtr:MTR_1g048750 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02435 04 42941075 42942910 Car04g02435 04 42941075 42942910 ECH