Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02433 ATGGAACACCAACGATATAATGGAAGTGTAAGAGTATTTCTCAGAGGACCAAATGGAAGAATCACAATTGAAGTGCGGTTTCCTATTAGGAATGGTGTTTATGAAATAATTCCTTCTATTTCATTTCGAGCTCCTGATAGAAATTTGATTCTGTCCCATATGACTATTGAAGATGGTAATTGTATGCTTTGTGAAAGTACCAACGATCGTATCAATGATCTTCTTTATAGGATGAATACGCGAGATATCTTGCCGATTTATGCTCAAAACGGCCACTACGTTCTTCAAGATAACGACATCAACCATGTTCCAACAAGAAGACGCTTTATTCATAACCTTGAAAGAATTAGAATTGATGAAGAAACAGCGGCTCAGACTTCGACGTGTTCTATATGTCTCGTTGATTTTTCTTTTGGATCGAAAGCGATTTGCTTGCCAAGTCCATGTTCACATGTTTATCACGAGAATTGTATTATGAGTTGGCTCAATAGATCAAACACATGTCCTTTGTGTCGTAGACTTATCTCATGA 531 0.371 MEHQRYNGSVRVFLRGPNGRITIEVRFPIRNGVYEIIPSISFRAPDRNLILSHMTIEDGNCMLCESTNDRINDLLYRMNTRDILPIYAQNGHYVLQDNDINHVPTRRRFIHNLERIRIDEETAAQTSTCSICLVDFSFGSKAICLPSPCSHVYHENCIMSWLNRSNTCPLCRRLIS 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02433 176 SMART ringv_2 128 172 IPR011016 GO:0008270
Car04g02433 176 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 95 173 - -
Car04g02433 176 SUPERFAMILY RING/U-box 109 175 - -
Car04g02433 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 176 IPR013083 -
Car04g02433 176 SMART ring_2 129 171 IPR001841 -
Car04g02433 176 CDD RING-H2_PA-TM-RING 128 172 - -
Car04g02433 176 ProSiteProfiles Zinc finger RING-type profile. 129 172 IPR001841 -
Car04g02433 176 Pfam Ring finger domain 128 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02433 Car-Chr4 42886586 42887116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02433 104 172 C3H Transcription Factor Family AT1G14200 36.232 1.66e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02433 - K22378 pvu:PHAVU_007G098000g 89.7373