Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02365 ATGCAATTTGGAGGTGATGTTAATGGTGACAACAACAAGAAGCAAAAACGCAAGATGGAGGAAACAACAACAGCAGATTCAGAAGTGTTACTGTCTCTGAGTCTAGGAGGAGGTGGTGGATCTTTTCCATTCAATTCCCTTAAGAACAATGAAGAACAAAGGGAATACCCATGCAAGTTTTGCAACAAGAAGTTTACAAGTTCTCAAGCATTAGGAGGACACCAAAATGCACATAGACGTGAAAGGGTGTTATCAAGAATGGATAAGGAATTTCAAATGGGAACTTTTGGACTTCTTGGTGCTCATCAATTGTATCCATACTCACCCATTCCAAATCATCATCAATATGCAACTACCTCACCCTTTTTTCATCATCACCCAAATATGGCTCCATCTTGGACTCAATTTGTTGCACCTTCAAGCTATGGAAACCCTTTTGGGACTCTCAACAACTCCTGGAGTACTCAAACTACTCCACAGaatagtaataataataatagtaataataataataataataataatTTGGGATTTGGTAATTATGAAATTAATAACCAACTACAGGTTCCTTCCTTTGGTGCTGCTGGTCTTAACGGCACTGTCTTAACGGGAAATAACAATATTCCCTATGTTGCTAATAACCGTCAAATTTCATCCTCATTCCCTGATTTGTCCCTCAATCTTTAG 687 0.3741 MQFGGDVNGDNNKKQKRKMEETTTADSEVLLSLSLGGGGGSFPFNSLKNNEEQREYPCKFCNKKFTSSQALGGHQNAHRRERVLSRMDKEFQMGTFGLLGAHQLYPYSPIPNHHQYATTSPFFHHHPNMAPSWTQFVAPSSYGNPFGTLNNSWSTQTTPQNSNNNNSNNNNNNNNLGFGNYEINNQLQVPSFGAAGLNGTVLTGNNNIPYVANNRQISSSFPDLSLNL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02365 228 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 13 220 - -
Car04g02365 228 MobiDBLite consensus disorder prediction 149 179 - -
Car04g02365 228 MobiDBLite consensus disorder prediction 1 25 - -
Car04g02365 228 Pfam C2H2-type zinc finger 56 81 - -
Car04g02365 228 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Car04g02365 228 PANTHER ZINC FINGER PROTEIN JAGGED 13 220 IPR045320 GO:0003700
Car04g02365 228 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Car04g02365 228 Gene3D Classic Zinc Finger 41 95 - -
Car04g02365 228 MobiDBLite consensus disorder prediction 10 24 - -
Car04g02365 228 SUPERFAMILY beta-beta-alpha zinc fingers 53 83 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02365 Car-Chr4 38162196 38162882 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02365 52 154 C2H2 Transcription Factor Family AT5G10970 36.792 1.95e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g02365 zf-C2H2_6 1.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02365 - - cam:101505119 236.498