Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02349 ATGGCTCATAATTCATCTGAACCCTCATCATCTTTAAGCTTTACATCATCTTCACCTTTATCAAATGGCTCAATTACTCACAACATATGCTCTTCTAATGCCTCAGATCACGGTCGAAATCTCGAGGTTATTAGTTTGAGTAAGCTTAGCTCTAATTTAGAGCAGCTTTTGATTGATTCTGATAATGATTATAGCGATGCCGAAATTGTTGTGGAGGGTATTCCGGTTAGAGTTCATCGATGTGTTTTAGCTTCTAGGAGTAAGTTTTTCCATGAATTGTTCAAGAGAGGTAAAGATAAAGGATCGTCAAAGAATGAAGGAAAATTGAAGTATTGTTTGAGTGATTTGTTGCCATATGGAAAAGTTGGATATGAAGCTTTTATCATATTTTTGAGCTATGTTTATAGTGGTAAACTCAAACCCTCTCCAATGGAGGTTTCTACATGCGTTGGTAATGTTTGTGCTCATGATGCTTGTGGACCTGCAATTAACTTTGCTGTGGAGGTGATGTATGCTTCTTCCATTTTTCAAATACCAGAGTTGGTTTCACTTTTTCAGCGACGTCTTCTTAACTTTGTAGGGAAGGCTCTTGTGGAAGATGTCATCCCAATCCTTATGGTTGCTTTCCATTGTCAATTGAGTCAACTTGTTGCACTATGTGTTGACAGGGTGGCACGATCAGACCTCAACCAGATCTCGATCGAGAAAGAGCTACCTTGTGAGCTCTCAGAAAAAGTTAAATTGTTCCGCCGTGACCTTCAGCAACAGAACAGTGGAAACTATGCTCCTGTTGTGGATGCTTTGTCTCTCAAACGAATCACGAGAATACACAAAGCATTGGACTCGGATGATGTCGAGCTTGTTAAACTTCTTTTAAATGAGTCGGACATTACTTTAGATGAAGCCGGCGCTCTCCATTATGCAGCAGCCTACTGTGACCCCAAGGTCGTTTCCGAAGTACTTGGGTTGGGTATGGCTAATGTCAATCTTCGGAATTCTCGAGGGTACACAGTGCTTCACGTTGCTGCCATGCGTAAGGAGCCTTCGATTATAGTATCGCTTCTTACAAATGGGGTTTGTGCATCGGATTTGACATTCGACGGTCAGAGTGCTGTTAGTATTTGTAGGAGGTTGACAAGGCCGAAAGATTATCACACAAAAACCGAACAAGGGAAAGAAACAAACAAAGACAGGATATGCATCGATGTTCTCGAAAGAGAAATGCGAAGGAATCCTTTGGCTGGAGATCTCTCTGTGTCTTCCCAAACAGTGGCTGATGATCTCCACATGAAGCTTTTGTACCTTGAGAACAGAGGTATGATGTCATGGATGATATTCCTTTAA 1344 0.4129 MAHNSSEPSSSLSFTSSSPLSNGSITHNICSSNASDHGRNLEVISLSKLSSNLEQLLIDSDNDYSDAEIVVEGIPVRVHRCVLASRSKFFHELFKRGKDKGSSKNEGKLKYCLSDLLPYGKVGYEAFIIFLSYVYSGKLKPSPMEVSTCVGNVCAHDACGPAINFAVEVMYASSIFQIPELVSLFQRRLLNFVGKALVEDVIPILMVAFHCQLSQLVALCVDRVARSDLNQISIEKELPCELSEKVKLFRRDLQQQNSGNYAPVVDALSLKRITRIHKALDSDDVELVKLLLNESDITLDEAGALHYAAAYCDPKVVSEVLGLGMANVNLRNSRGYTVLHVAAMRKEPSIIVSLLTNGVCASDLTFDGQSAVSICRRLTRPKDYHTKTEQGKETNKDRICIDVLEREMRRNPLAGDLSVSSQTVADDLHMKLLYLENRGMMSWMIFL 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02349 447 Pfam NPR1/NIM1 like defence protein C terminal 376 446 IPR021094 -
Car04g02349 447 ProSiteProfiles BTB domain profile. 65 143 IPR000210 GO:0005515
Car04g02349 447 SMART BTB_4 65 193 IPR000210 GO:0005515
Car04g02349 447 SUPERFAMILY POZ domain 51 191 IPR011333 -
Car04g02349 447 Pfam Ankyrin repeat 335 358 IPR002110 GO:0005515
Car04g02349 447 CDD BTB_POZ_NPR_plant 48 193 - -
Car04g02349 447 Pfam BTB/POZ domain 62 183 IPR000210 GO:0005515
Car04g02349 447 PANTHER REGULATORY PROTEIN NPR3 5 446 IPR044292 GO:0009862|GO:2000022|GO:2000031
Car04g02349 447 SUPERFAMILY Ankyrin repeat 265 377 IPR036770 -
Car04g02349 447 MobiDBLite consensus disorder prediction 1 21 - -
Car04g02349 447 Gene3D Potassium Channel Kv1.1; Chain A 32 225 IPR011333 -
Car04g02349 447 PANTHER REGULATORY PROTEIN, PUTATIVE-RELATED 5 446 - -
Car04g02349 447 SMART ANK_2a 334 366 IPR002110 GO:0005515
Car04g02349 447 SMART ANK_2a 300 330 IPR002110 GO:0005515
Car04g02349 447 SMART ANK_2a 271 299 IPR002110 GO:0005515
Car04g02349 447 Pfam Domain of unknown function (DUF3420) 228 277 IPR024228 -
Car04g02349 447 Gene3D - 268 408 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02349 Car-Chr4 37477018 37481215 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02349 274 382 Miscellaneous Gene Families AT1G07710 26.957 6.10e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Car04g02349 BTB 9.6e-13 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02349 K14508 - gmx:100217338 706.442