Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02342 ATGTACGGCTGTGGTCACCGTGAACGTGAATCTGAATCTGagaggacgaggatgcacaacgaagaagtgaatgaagaagtagaaaaagaagaagGTTCTTTCAAGAGCTGGGCTAAACAAACAGAGGAGAGCTATCAGTTGCAACTGGCACTGGCGCTACGCATTTCATCTCACTCAGCTTCTGCCGCTCATTCCAATTACTTCCTATGTCAGGTAAATGGTTGTTTGCAATACTCAGACAAAGTTGTAGATGGCTTTTACCTAATCCATGGGATGGATGCATATACATGGACTATAAGTACCGATATGCAGAATGTTGGTATGATTCCATCATTTGAATCACTCATGTGTGTTAAGCCATGTGATGACTCGTCAGTTGTAGTGGTTGCTATTGATACGTCTAGAGATCCTGGATTGAGAGAACTGCAAAATGGAGTATTAACTCTTTCAACTAACTGGGTTACTACCAAAGATGCAACTGATCAGCTTGCAAATCTTGTTTATAATAGGATGGGGGGGGGATCTTCTGACGAGGAACTTTTAGGTATACGCTGGAAGGAATGCACCCAAATTCTTAAAAGCTGTCTGCAATCTATCGTTCTTCCGATTGGAAGCTTACCTGTTGGCCTTTGTGTCCATCGAGCATTGCTGTTCAAAGTGTTAGCGGACTTAATCAACCTGCCATGTCGAGTTGCTAAGGGTTGCAAGTACTGTAGAAAGGACACGTGCGCTTCTTGTATAGTGCAATTTGGTTCTGACAGGGAGTATATGATTGATTTAGTAGGAAGGCCTGGGGAAACATGTCAACCTGATTCTTCAGTGAATTCTGCGTCTTCAGTTTTGATCCCTTCACCATTATGTCATCCAAGGTTCAAGCCAGTTGAAACAGCTGAATATACAAAGACATTAGCCCGACTGTATTTCTTGGACAGTCAAGCACTGCATCTTGTATTTGATACCACGTCAGGAGATAGAGTTGAGTGTAGTGACAGAATGGATCTACAGCAAACTGAAATGTTTGGTGCAAGCTATGCTGGTCGGAACAACCAAATAGTTGCTTTGAATCCTGGTACAGAGGAACACATGTCTTTCAATGAAGCAAACCAGTCAGAAGTGAATTATTCAAGTCGTGAGGAGGAGGATCTGGACATTCCATGGAGTGAACTTATTCTGAAGGAAAACATTGGGACAGGGTCATTTGGAACAGTTCTTCGTGCGGACTGGCGTGGCTCTGATGTTGCTGTGAAGATACTTAAGGTGCAAGGTTTTGATTCTGAACGATTTGAAGAATTTCTGAATGAGGTCACACTCATGAAGCGCCTTCGTCATCCAAACATTGTACTTCTAATGGGTGCCGTAATCCAACCGCCAAAATTATCAATTGTAACAGAATATTTATCAAGAGGCAGCTTGTATGAACTTCTGCAGATGCCAAGTATTGGATCTTCAATCAGCGAGAAGCGTCGTCTAAGTATGGCATGCGATGTGGCAAGTGGAATGAATTATCTTCATCAAATGAAGCCTCCCATTGTTCATAGAGATTTGAAGTCTCCAAATCTTTTGGTTGATGAttcatacactgttaagGTATGTGACTTTGGCCTCTCACGTTCAAAAGCAAATACATTTCTTTCATCTAAAACAGCTGCTGGAACTCCTGAATGGATGGCACCAGAAGTTATCAAAGGTGAACTATCGAATGAAAAATGTGATGTATTCAGCTTTGGTGTAATCTTGTGGGAACTGGTGACCCTTCAACAACCATGGAGGCAATTAAATCCTTCACAGGTTGTTGCAGCTGTTGGTTTTATGGACAAAAGGCTTGAAATTCCAAGGCACGTGAATCCTCAAGTGGCTGCCTTGATTGAGCTCTGCTGGTCTACGGAACCAAGGAGGCGGCCTTCTTTCTCCTATATTATGAAATGTTTGCAGCAAATAATTGCCGATGCTGAAGTGTGA 1959 0.4109 MYGCGHRERESESERTRMHNEEVNEEVEKEEGSFKSWAKQTEESYQLQLALALRISSHSASAAHSNYFLCQVNGCLQYSDKVVDGFYLIHGMDAYTWTISTDMQNVGMIPSFESLMCVKPCDDSSVVVVAIDTSRDPGLRELQNGVLTLSTNWVTTKDATDQLANLVYNRMGGGSSDEELLGIRWKECTQILKSCLQSIVLPIGSLPVGLCVHRALLFKVLADLINLPCRVAKGCKYCRKDTCASCIVQFGSDREYMIDLVGRPGETCQPDSSVNSASSVLIPSPLCHPRFKPVETAEYTKTLARLYFLDSQALHLVFDTTSGDRVECSDRMDLQQTEMFGASYAGRNNQIVALNPGTEEHMSFNEANQSEVNYSSREEEDLDIPWSELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDSERFEEFLNEVTLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYELLQMPSIGSSISEKRRLSMACDVASGMNYLHQMKPPIVHRDLKSPNLLVDDSYTVKVCDFGLSRSKANTFLSSKTAAGTPEWMAPEVIKGELSNEKCDVFSFGVILWELVTLQQPWRQLNPSQVVAAVGFMDKRLEIPRHVNPQVAALIELCWSTEPRRRPSFSYIMKCLQQIIADAEV 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02342 652 CDD STKc_MAP3K-like 395 641 - -
Car04g02342 652 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 26 336 - -
Car04g02342 652 Pfam Protein tyrosine and serine/threonine kinase 390 643 IPR001245 GO:0004672|GO:0006468
Car04g02342 652 PRINTS Tyrosine kinase catalytic domain signature 614 636 IPR001245 GO:0004672|GO:0006468
Car04g02342 652 PRINTS Tyrosine kinase catalytic domain signature 570 592 IPR001245 GO:0004672|GO:0006468
Car04g02342 652 PRINTS Tyrosine kinase catalytic domain signature 463 476 IPR001245 GO:0004672|GO:0006468
Car04g02342 652 PRINTS Tyrosine kinase catalytic domain signature 504 522 IPR001245 GO:0004672|GO:0006468
Car04g02342 652 PRINTS Tyrosine kinase catalytic domain signature 551 561 IPR001245 GO:0004672|GO:0006468
Car04g02342 652 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 361 650 - -
Car04g02342 652 ProSitePatterns Protein kinases ATP-binding region signature. 395 416 IPR017441 GO:0005524
Car04g02342 652 Gene3D Phosphorylase Kinase; domain 1 382 467 - -
Car04g02342 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Car04g02342 652 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 361 650 - -
Car04g02342 652 PIRSF TyrPK_CSF1-R 482 652 - -
Car04g02342 652 PIRSF TyrPK_CSF1-R 378 479 - -
Car04g02342 652 PIRSF TyrPK_CSF1-R 10 82 - -
Car04g02342 652 Pfam Ethylene-responsive protein kinase Le-CTR1 72 266 - -
Car04g02342 652 ProSiteProfiles Protein kinase domain profile. 389 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02342 652 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 26 336 - -
Car04g02342 652 Gene3D Transferase(Phosphotransferase) domain 1 468 651 - -
Car04g02342 652 SMART serkin_6 389 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g02342 652 SUPERFAMILY Protein kinase-like (PK-like) 371 643 IPR011009 -
Car04g02342 652 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02342 Car-Chr4 37333297 37357802 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02342 37 650 MAP Kinase Kinase Kinase AT5G03730 56.175 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Car04g02342 PK_Tyr_Ser-Thr 7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02342 K14510 - gmx:100807496 1057.74