Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02319 ATGCCACTCCTTTCTTGCTCTAACCTTCTCTCTCTATCAGTTACCACATGTCTTACGATTTCTGATGCATGGAATATTTTGAGAGAAAGAAAGGGATTTTTCGATGTGATACTACTCAATGTTCTAATGCAAGACATGAATTCCTATGATTTTATTCTACATGTTACGCAACAAATCAAAATTCCTGTCATTATGATGTCTAGTGATGGCACAACAAGTTCAGTGATGAGGGCTATAGAAAATGGGGCATGTGATTATTGGATTAAACCATTGCATGAGAAACAAATCAAGAACATGTGGATACATGCTGCAAGAAAGTTAATGAATGAAAATAAAAAACAAGAAATTAATAGAAAAAATCTGGAGTTTGAAGGTAAGAAAATAAAGGGGGAAAAAGATGATTTGATATTAGGTTTAATTGATGCAACAAGTGAAGGTGTAAAAATTGACCCAAAAGAGGGTTGTTCTAAAGTAATAGTAGAAAaaagtgattatgttattgaaaaagataatctaaatgaaaatgaaCCATCAACAAAGAAGGCACGTGTGGCATGGACGGTTGAGTTGCATCAACAATTTGTTAGGGCTGTCAAGCAACTTGGAGTTGATAAGGCTGGACCAAAGAGAATTATGAAAATAATGAATGTTAATGGTTTGACTAGAGCGCATATTGCTAGTCATTTGCAGAAATTTAGACTTTATTTGAAGAGAGAAGAAACACATAAACATCTACAACAAAAGAAACAACAGCAACAAAATGGAACTGTAAAAGCTATAGATTCCAACAATTCAAATGGATCTGAAGGATTTGATAATCATGCTTTAGCTCTTACTAATCATGTTTTGAATCCTCTAATTGAAGTTCCAAAACATGATCATCACCAAAACCAAAATAGTAGTAATGCCCAATTGAAAACGTCAACAATGTGGCCTAATTTTAAGCATGAATCATATGGCTGCAATTCTTCTAATCAGCATGTTTCTTCCAACACGCTCCTACAACATGAATATGCACCATCATCATCATCATATGGAAAATGGGTTCCAACTGAATCATCAAATCATTTAGTTGACCCAGCCAATATTAGAAATCTTATATTGATGAAAAATGTTACGAATACAAAGCCTATGCAGCAGGAAACATGA 1149 0.3307 MPLLSCSNLLSLSVTTCLTISDAWNILRERKGFFDVILLNVLMQDMNSYDFILHVTQQIKIPVIMMSSDGTTSSVMRAIENGACDYWIKPLHEKQIKNMWIHAARKLMNENKKQEINRKNLEFEGKKIKGEKDDLILGLIDATSEGVKIDPKEGCSKVIVEKSDYVIEKDNLNENEPSTKKARVAWTVELHQQFVRAVKQLGVDKAGPKRIMKIMNVNGLTRAHIASHLQKFRLYLKREETHKHLQQKKQQQQNGTVKAIDSNNSNGSEGFDNHALALTNHVLNPLIEVPKHDHHQNQNSSNAQLKTSTMWPNFKHESYGCNSSNQHVSSNTLLQHEYAPSSSSYGKWVPTESSNHLVDPANIRNLILMKNVTNTKPMQQET 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02319 382 MobiDBLite consensus disorder prediction 248 271 - -
Car04g02319 382 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 329 IPR045279 GO:0009736
Car04g02319 382 SUPERFAMILY CheY-like 12 112 IPR011006 -
Car04g02319 382 Gene3D - 178 240 - -
Car04g02319 382 Pfam Response regulator receiver domain 13 98 IPR001789 GO:0000160
Car04g02319 382 SUPERFAMILY Homeodomain-like 179 238 IPR009057 -
Car04g02319 382 MobiDBLite consensus disorder prediction 241 271 - -
Car04g02319 382 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 13 329 - -
Car04g02319 382 ProSiteProfiles Response regulatory domain profile. 1 104 IPR001789 GO:0000160
Car04g02319 382 Pfam Myb-like DNA-binding domain 183 231 IPR001005 -
Car04g02319 382 Coils Coil 104 124 - -
Car04g02319 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 178 237 IPR017930 -
Car04g02319 382 Gene3D - 4 124 - -
Car04g02319 382 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 181 234 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02319 Car-Chr4 36254880 36258680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02319 23 282 Response Regulator Gene Family AT3G16857 34.926 3.43e-43 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Car04g02319 Response_reg 3.5e-10 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02319 - K14491 cam:101491966 741.11