Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02312 aTGTCCCTTGAAGAGACTCTAAGATCTCTCTCCCTTGACTACCTCAACCTTCTCATCAACGGCCAAGCCTTCAGCGACGTAACTTTCCAAGTCGAAGGTCGGTTGGTTCACGCTCATCGCTGCATCTTAGCAGCAAGGAGTCTCTTCTTCAGGAAATTCTTTTGTGGACCCGACCCACCGCCGGGTCTTGACCCAACAGGAGGAGGATCTTCTCGGCAATCCAATCCAAGACCCGGTGTTATTCCGGTGAATTCTGTTGGATATGAGGTGTTCCTCCTCCTTTTGCAGTTTCTGTACAGTGGACAAGTTTCTATTGTTCCTCAGAAACATGAGCCTAGGCCTAATTGTGGTGAAAGAGGGTGCTGGCACACGCATTGTTCCTCAGCCGTTGATCTTGCCCTTGACACACTCGCTGCCGCTAGATACTTTGGAGTTGAACAGCTTGCATTGCTCACTCAGAAGCAACTAGTGAGCACGGTAGAGAAAGCTTCAATAGACGATGTGATGAAAGTACTAATAGCTTCAAGAAAGCAAGAAATGCACCAACTTTGGACAACATGTTCCCACCTTGTTGCCAAATCTGGACTCCCACCTGAAGTCCTTGCAAAGCACCTCCCCATCGACGTAGTCGCCAAAATCGAAGAGCTTCGTCTAAAAACCTCCTTAGCACGCCGCTCCTTAATGCCACTccaccaccatcatcaccacctccaccacgacTTGGGCGACCTTGAGGACCAAAAAATCCGCCGAATGAGGCGGGCTCTTGACTCCTCAGACGTCGAACTAGTCAAACTCATGGTCATGGGAGAAGGACTCAACCTCGATGAAGCATTGGCATTACACTATGGAGTTGAGAATTGCAGCAGAGAAGTGGTGAAAGCCTTGCTTGAACTCGGTGCCGCCGATGTTAACTACCCTGCTGGACCATCCGGGAAATCTCCGCTTCATGTGGCCGCAGAGATGGTGTCGCCAGAAATGGTGGCGGTTTTGCTTGACCATCATGCGGACCCCACAGTTAGAACCGTTGATGGTGTGACACCTTTGGATATACTAAGAACCCTAACCTCTGATTTTCTCTTCAAAGGTGCTGTTCCTGGATTGACCCACATTGAACCAAACAAGTTAAGATTATGTTTGGAACTTGTTCAATCCGCAGCACTTGTTATGTCGCGTGAAGAAAACAATGCTAATAACAACAACAATGCATCTTCATCAGCAGCACCAATTTACCCTCCAATGAGTGAAGATCATAGCAGCAGTAGCAGTGGAaataacaacaataataacaacaacaataacaTTGGTAACCTGAATTTGGATTCTAGATTGGTGTACCTCAACCTTGGTGCTGCCCGAATGGGAGGAGGTGGTGATGATGATGATAGTGGTCACAATAGTCATAGGGAAGCCATGAATCGTCAAGGTGGTGGATGTGACCCAACAATGTATCATCACTCTCATGATTTCTAA 1473 0.4589 MSLEETLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPPGLDPTGGGSSRQSNPRPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCSSAVDLALDTLAAARYFGVEQLALLTQKQLVSTVEKASIDDVMKVLIASRKQEMHQLWTTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKTSLARRSLMPLHHHHHHLHHDLGDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYGVENCSREVVKALLELGAADVNYPAGPSGKSPLHVAAEMVSPEMVAVLLDHHADPTVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREENNANNNNNASSSAAPIYPPMSEDHSSSSSGNNNNNNNNNNIGNLNLDSRLVYLNLGAARMGGGGDDDDSGHNSHREAMNRQGGGCDPTMYHHSHDF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02312 490 PANTHER REGULATORY PROTEIN NPR5 1 490 - -
Car04g02312 490 SUPERFAMILY POZ domain 10 158 IPR011333 -
Car04g02312 490 Pfam Domain of unknown function (DUF3420) 195 253 IPR024228 -
Car04g02312 490 Pfam Ankyrin repeats (3 copies) 259 341 IPR002110 GO:0005515
Car04g02312 490 Gene3D - 244 359 IPR036770 -
Car04g02312 490 ProSiteProfiles Ankyrin repeat region circular profile. 311 337 - -
Car04g02312 490 MobiDBLite consensus disorder prediction 457 490 - -
Car04g02312 490 SMART BTB_4 25 160 IPR000210 GO:0005515
Car04g02312 490 MobiDBLite consensus disorder prediction 394 436 - -
Car04g02312 490 SUPERFAMILY Ankyrin repeat 270 354 IPR036770 -
Car04g02312 490 SMART ANK_2a 311 340 IPR002110 GO:0005515
Car04g02312 490 SMART ANK_2a 276 306 IPR002110 GO:0005515
Car04g02312 490 Gene3D Potassium Channel Kv1.1; Chain A 3 193 IPR011333 -
Car04g02312 490 Pfam BTB/POZ domain 16 111 IPR000210 GO:0005515
Car04g02312 490 ProSiteProfiles BTB domain profile. 25 107 IPR000210 GO:0005515
Car04g02312 490 CDD BTB_POZ_NPR_plant 8 160 - -
Car04g02312 490 ProSiteProfiles Ankyrin repeat profile. 311 343 IPR002110 GO:0005515
Car04g02312 490 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 490 IPR044284 GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02312 Car-Chr4 35500075 35503986 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Car04g02312 BTB 1.4e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02312 K14508 - zju:107433767 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02312 04 35500075 35503986 Car04g02312 04 35500075 35503986 ECH
Car03g02037 03 66592934 66595896 Car04g02312 04 35500075 35503986 PCT