Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02296 ATGGAAGTGGAGATGGAAAACACCACATTGAGTGTTACTGGTGAATCATCTATACCTGGTTCTGATGTTCAAGATCAAAACCCTGTTTCTGTTCAACCAACTTTGCCCCAGCCACCTCAACCTGTTATTCCACCAGTTATTACTCCTGTCGTGCCTCCTCTGGCTCCACTTCCTGCAGTTCCTTCCTCTCTTGTCCGGCCTCTGGCACCGCTTCCAGTCCGGCCACCAGTTGTTAGGCCACCGGTTCCGCAAAATGGTGAGGCTGGGTCTAGTGATTCTGATTCAGATGATGGTGCAGACACCCGAATTAATAAGGGTACCGGGGAGTATGAGATATCAGAAGAGAGTAGACTGGTGAGGGAGCGACAGGAGAAAGCGATGCAAGACCTCATGATGAGGAGGCGTGCTGCTGCTCTTGCTGTTCCCACAAATGACATGGCAGTGAGGGCCCGTCTTCGCCATCTTGGCGAGCCAATTACTCTCTTTGGCGAGAGGGAGATGGAGAGAAGAGACAGGTTGCGGATGATTATGGCAAAGTTGGATGCCGAAGGTCAGTTGGAAAAGCTAATGAAAGCTCTTGAGGATGAAGAGGCCGCGACCTCTGCTCCCAAAGATGAAGCTGAGGATGATCTGCAGTATCCTTTTTACACTGAAGGGTCAAAGTCTCTCCTGGATGCAAGGATTAATATCGCTAAATATTCTTTAGTAAGGGCCGCGTTGCGTATTCAACGTGCCCAGagaagaagagatgatccagatgaagatgtggatgcagaGATGGATTGGACGTTGAAGCAGGCAGCGAATTTGAGTCTTCAATTCAGTGAAATAGGAGATGATCGACCACTTACTGGTTGCTCGTTTTCCCGGGATGGAAAAGGGCTTGCTACCTGTTCTCTAACTGGAGCTTCCAAGTTGTGGAGCATGCCTAATGTAAAAAAAGTGTCTACCTTCAAGGGGCACACCGAGCGAGCTACTGATGTTGCTTATTCTCCTATGCACAATCATTTAGCAACTGCCTCTGCTGACCGTAAAGCAAAGTACTGGAATGATCAAGGATCCCTTTTGAGAACATTTGAGGGCCATCTTGATCGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTACCTGGGCACTGCTAGCTTTGACAAGACATGGAGATTATGGGACGTTGAAACAGGAGAGGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATATGGTTTAGCTTTTCATCACGATGGATCCTTAGCTGCATCTTGTGGACTGGATGCTCTGGCTCGTGTATGGGACCTTCGAACTGGGAGAAGTGTTCTTGCCCTAGAAGGTCATGTCAAACCTATTCTTGGCATCAGTTTTTCTCCTAATGGATACCATTTAGCCACTGGCGGACGGGACTTTAAGCCCGTGAAGACATTATCTGGGCATGAAGCTAAAGTTACTTCTCTGGATGTTCTTGGAGATGGTGGGTATATTGTTACTGTCTCCCATGACCGCACCATAAAGCTATGGTCAAGCAGCACTACTGATGAGCAAGCTATGGATGTTGATTAA 1560 0.4686 MEVEMENTTLSVTGESSIPGSDVQDQNPVSVQPTLPQPPQPVIPPVITPVVPPLAPLPAVPSSLVRPLAPLPVRPPVVRPPVPQNGEAGSSDSDSDDGADTRINKGTGEYEISEESRLVRERQEKAMQDLMMRRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKALEDEEAATSAPKDEAEDDLQYPFYTEGSKSLLDARINIAKYSLVRAALRIQRAQRRRDDPDEDVDAEMDWTLKQAANLSLQFSEIGDDRPLTGCSFSRDGKGLATCSLTGASKLWSMPNVKKVSTFKGHTERATDVAYSPMHNHLATASADRKAKYWNDQGSLLRTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDVETGEELLLQEGHSRSVYGLAFHHDGSLAASCGLDALARVWDLRTGRSVLALEGHVKPILGISFSPNGYHLATGGRDFKPVKTLSGHEAKVTSLDVLGDGGYIVTVSHDRTIKLWSSSTTDEQAMDVD 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02296 519 Gene3D - 119 188 IPR036285 -
Car04g02296 519 Pfam WD domain, G-beta repeat 470 507 IPR001680 GO:0005515
Car04g02296 519 Pfam WD domain, G-beta repeat 353 391 IPR001680 GO:0005515
Car04g02296 519 Pfam WD domain, G-beta repeat 440 468 IPR001680 GO:0005515
Car04g02296 519 Pfam WD domain, G-beta repeat 402 433 IPR001680 GO:0005515
Car04g02296 519 Pfam WD domain, G-beta repeat 314 350 IPR001680 GO:0005515
Car04g02296 519 SMART WD40_4 311 350 IPR001680 GO:0005515
Car04g02296 519 SMART WD40_4 352 391 IPR001680 GO:0005515
Car04g02296 519 SMART WD40_4 468 507 IPR001680 GO:0005515
Car04g02296 519 SMART WD40_4 394 433 IPR001680 GO:0005515
Car04g02296 519 SMART WD40_4 269 308 IPR001680 GO:0005515
Car04g02296 519 SMART WD40_4 436 467 IPR001680 GO:0005515
Car04g02296 519 SMART pr04_2 143 196 IPR014906 -
Car04g02296 519 ProSiteProfiles Trp-Asp (WD) repeats profile. 443 468 IPR001680 GO:0005515
Car04g02296 519 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 359 396 - -
Car04g02296 519 ProSiteProfiles Trp-Asp (WD) repeats profile. 475 516 IPR001680 GO:0005515
Car04g02296 519 MobiDBLite consensus disorder prediction 1 112 - -
Car04g02296 519 PANTHER WD40 REPEAT PROTEIN 466 512 - -
Car04g02296 519 SUPERFAMILY WD40 repeat-like 269 511 IPR036322 GO:0005515
Car04g02296 519 ProSiteProfiles Trp-Asp (WD) repeats profile. 401 442 IPR001680 GO:0005515
Car04g02296 519 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 350 IPR001680 GO:0005515
Car04g02296 519 MobiDBLite consensus disorder prediction 1 31 - -
Car04g02296 519 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 475 507 - -
Car04g02296 519 CDD WD40 282 516 - -
Car04g02296 519 Gene3D - 277 350 IPR015943 GO:0005515
Car04g02296 519 Gene3D - 469 515 IPR015943 GO:0005515
Car04g02296 519 PANTHER BNAC04G01920D PROTEIN 73 468 - -
Car04g02296 519 ProSitePatterns Trp-Asp (WD) repeats signature. 420 434 IPR019775 -
Car04g02296 519 PANTHER BNAC04G01920D PROTEIN 466 512 - -
Car04g02296 519 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 400 IPR001680 GO:0005515
Car04g02296 519 Coils Coil 179 199 - -
Car04g02296 519 Pfam pre-mRNA processing factor 4 (PRP4) like 148 174 IPR014906 -
Car04g02296 519 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 350 - -
Car04g02296 519 ProSitePatterns Trp-Asp (WD) repeats signature. 378 392 IPR019775 -
Car04g02296 519 MobiDBLite consensus disorder prediction 32 82 - -
Car04g02296 519 MobiDBLite consensus disorder prediction 95 112 - -
Car04g02296 519 Gene3D - 351 468 IPR015943 GO:0005515
Car04g02296 519 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 401 438 - -
Car04g02296 519 PANTHER WD40 REPEAT PROTEIN 73 468 - -
Car04g02296 519 SUPERFAMILY PRP4-like 126 181 IPR036285 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02296 278 476 U-box Gene Family AT2G33340 26.316 4.64e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02296 K12662 - gmx:100788948 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02296 04 34475735 34478859 Car04g02296 04 34475735 34478859 ECH