Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02286 ATGGATCACACTAACAAATCCAATCACTCCCTTTCTTACTCCACTCTCTTCAATCTTGAGCCTTTGATGAACTTTCAACTTCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAAGAAAGCAGAGATAGCCGAGGTGGTGGGGCAATAGCAAATCACAGTAACGGGAATGTGCATGTAAAGGAGGCGAATTTTTCGAAGAAGAAGAGGGTGTGGTCTCAAAACAGTGACGATGAAGACAAACAAATTTTTTACGGGACATACATGACAGAGGGGCGATATCGATCAATGCTGGGTGATCATGTTCAGAAATACAAGAGGAGGTCTAAGGATGCCTCTTCTAGCCCTGCCCAGAACCGGGGTGCTGTCCCACTTATCAAAAACAATGGATCGAAAGCTCAGAAGTTAGGGAACGATCTCCGGGGAGGACTGAATGCTGCTGAGACTTTATCTGAATGGTTATATAACTCAAATTCTCAGAAACATGGGAACCACCGTCATGCAGTTATCGTGCCACGGAATGGCACTGATAGGGTTATGTACGAACCTTCTATTTTAGAAATTGGAGATGGTATCACATATAAGATTCCTCCGGTTTATGATAAGCTGGCTACAACACTGAACCTTCCAAGCTTCTCAGATATCCACGTGGATGAATTTTACTTGAAGGGTACCTTGGATTTGGGGTCCTTGGCTGCGATGATGGCTGCCGATAAAAGGTTAGGCAATAGAAACCGAGCAGGCATGGGGGAACCACTATCTCAATATGAATCGCTTCAGGCACGAATTAAGGCCCTGTCAGCTTCTAATTCACCTCATAAATTCAGTCTAAATGTGTCTGATATTGGTTTGAATTCATCCATTCCGGAGGGGGCTGCGGGAAGCATAAAGCGGTCTATTTTGTCTGAGGGTGGTGTTTTGCAGGTTTATTATGTAAAGGTTTTGGAAAAAGGTGACACTTACGAGATCATTGAGCGAAGCCTACCCAAGAAGATAAAGGTAAAGAAAGATCCTGCTTCGATCGAGAAGGAGGAAACAGATAGAATTGGAAAGATTTGGGTAAACATTGTAAGAAGAGACATACCAAAGCATCATAGGAATTTTACTACTTTTCATCGAAAGCAACTCATTGATGCCAAGAGGTGCTCAGAGTACTGTCAAAGAGAGGTTAGAATGAAAGTTAGCAGATCACTTAAATGGAATAGGGGTGCTAGCATTCGAACCCGGAAACTATCTAGAGACATGTTGCTATTCTGGAAACGAATAGATAAAGAGATGGCTGAAGTGAGGAAAAGAGAGGAGAAAGAAGCTGCCGAAGCTTTGAGACGTGAACAGGAGCTCCGAGAAGCTAAGAGACAGCAGCAAAGGCTTAATTTTCTCATACAACAAACTGAGCTCTACAGTCACTTTATGCAGAACAAGTCAGATTTACTATCTTCGGAAGCTTTGCCTGTGGTGGAGGAAAAAACAAATGATCAAGATGCATTGTTCGACTCATCTGATGCCAGGCCTATAGAGGAGGAAGATCCAGAAGAAGCTGAATTGAAGAGAGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTCTAAGCAGAAAAAGTTGACTAGTGCTTTTGACAATGAATGTTTGAGGCTGCGCCAGGTGGGTGAAGCTGATTCACTTGTGCAGGATGTCGCAGGAGCGAGTAACATTGATTTACAAACCCCATCAACCATGCCGGTGGCATCCACAGTTCAAACACCTGAATTATTTAAAGGTGTTCTAAAAGAATACCAGCTGAAAGGTCTCCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTTGGAAAAACCATACAGGCTATGGCTTTTTTAGCCCATTTAGCTGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCTGCTTCTGTATTAAACAATTGGAATGAGGAACTCGAGCGCTTCTGCCCTGAACTCAAAAGACTTCCATATTGGGGAGGGCTTTCAGAGAGAACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTATATCGTAGGGAAGCTAAATTCCACATTCTCATTACAAGCTATCAGCTATTAGTAACTGATGAGAAGTTTTTTCGTCGCGTGAAATGGCAGTACATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTGCAAACAGTATAAGATGGAAGACACTTCTCAGCTTTAATTGTCGGAATCGTCTACTGCTGACTGGTACACCTATTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTTCACTTCATTATGCCAACTTTATTTGACAGCCACGAGCAGTTTAATGAGTGGTTCTCAAAAGGAATTGAGAATCATGCAGAACATGGGGGTACTTTGAATGAGCACCAGCTTAATAGATTGCATTCAATTTTAAAACCTTTCATGCTACGACGTGTTAAAAAAGATGTAGTTTCTGAGTTGACTAGAAAAACTGAGGTTATGGTGCATTGCAAGTTGAGTTCTCGGCAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAACTGTTTGATAGTAATCGTGGGCAGCTTAACGAGAAGAAAATTCTGAATTTGATGAATATTGTTATTCAACTGAGAAAGGTTTGCAACCATCCAGAGTTGTTCGAAAGGAGTGAGGGAAGCACATACTATTACTTTGGTGAAATTCCAAATTCCCTTTCACCTCCTCCATTTGGAGAGTTGGAGGATGTATACTATTCTGGAGGTCTCAACCCCATATCATATCAGATACCAAAACTTGTCTATAAGGAGATTATGCAAAGCTCTGAGACTCTCAGTTCAGCTGTTGGCCGTGGTGTCTCCAGAGAAACTTTTCAGAAACATTTTAATATTTTTAGACCGGAAAATGTCCATCGATCTATTTTCTCAGAAAAAACAAATGTTAAAAGCGGAAACTTCGGTTTTACCCATTTGATGGATTTGTCTCCTCAAGAGGTGGCATTTTTGGCCACTGGTTCTTTCATGGAGCGACTACTATTCTCTATGATGAGATCAGAACAAAGTTTCATTGATGAAATTGGAGACTTCCTTACGGAATACGTTGTAGATGATCCTGAGTGTAATTTCCTTGAAAAAGATACAGTGAGAGCTGTTACAAGAATGTTAATGCTGCCATTGAGATCTGAGACCAAGTTTCTTCAAAATCAATTTGCAACTAGGCTGCTCTCAAGTGCTCCTTTTGAGGGCTTGGTGGTTTCACACCAGGATAGGCTTTTATCTAATGCAAGGCTTCTTCACTCAGCATACACATATATCCCACCAACAAGAGCTCCCCCTATTGGTGCTCACTGCTCTGATAGAAACTTCTCTTATAAAAAGATTGAAGATTTACACGATCCTTGGGTTAAGAGGCTTTTTGTGGGATTTGCACGTACATCTGACTGTAATGGGCCTAGAAAGCCTGGTCACCATCATCTTCATCATTTAATTCAAGAGATAGATTCTGATATACCTGTTTCACAGCCTGCACTGCAGTTAACTCACAGTATTTTTGGCTCCTCACCACCTATGCGGAATTTTGACCCAGCAAAATTGCTCACTGACTCTGGGAAGCTTCAAACACTTGATATATTACTGAAACGATTACGGGCAGGAAATCATCGTATTCTCTTGTTTGCCCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTACAGAAAATATAAGTATTTTAGACTTGATGGGTCATCTACAATTCAGGATCGTAGAGACATGGTCAAGGACTTCCAACAAAGGAGTGATATTTTTGTGTTCTTATTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCTACATTGGATTTGCAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAGAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAAAAAAGTACTGTTCAGAACCTTGTCATGACTGGTGGTTCAGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTCCAATTGCAACAGAAATTAAAGGAAATCCCTCTCCAGGTAAAGGATAGGCAAAAGAGAAAACCATCTATGAAGGGCATTCGGGTAAACGAAGATGGTGATGCATCTCTGGAAGATTTGACAAACTCTGCAGCTCAGAGTACTACAGATTATGATGCTTTCGTGGATCCAGAGGGGCAAAAGTCTAGTAATAAAAAGGATTACTCTCTTAACATGGAAACTTATGTTTTGGTCCTTTCTATTTTGGAGAATATCCGTTATGAACTTCCGTGTGGGTTATAG 4419 0.4114 MDHTNKSNHSLSYSTLFNLEPLMNFQLPQQDDDFDYYGNSSQDEESRDSRGGGAIANHSNGNVHVKEANFSKKKRVWSQNSDDEDKQIFYGTYMTEGRYRSMLGDHVQKYKRRSKDASSSPAQNRGAVPLIKNNGSKAQKLGNDLRGGLNAAETLSEWLYNSNSQKHGNHRHAVIVPRNGTDRVMYEPSILEIGDGITYKIPPVYDKLATTLNLPSFSDIHVDEFYLKGTLDLGSLAAMMAADKRLGNRNRAGMGEPLSQYESLQARIKALSASNSPHKFSLNVSDIGLNSSIPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKIKVKKDPASIEKEETDRIGKIWVNIVRRDIPKHHRNFTTFHRKQLIDAKRCSEYCQREVRMKVSRSLKWNRGASIRTRKLSRDMLLFWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSDLLSSEALPVVEEKTNDQDALFDSSDARPIEEEDPEEAELKREALKAAQEAVSKQKKLTSAFDNECLRLRQVGEADSLVQDVAGASNIDLQTPSTMPVASTVQTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVTDEKFFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTRKTEVMVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYYYFGEIPNSLSPPPFGELEDVYYSGGLNPISYQIPKLVYKEIMQSSETLSSAVGRGVSRETFQKHFNIFRPENVHRSIFSEKTNVKSGNFGFTHLMDLSPQEVAFLATGSFMERLLFSMMRSEQSFIDEIGDFLTEYVVDDPECNFLEKDTVRAVTRMLMLPLRSETKFLQNQFATRLLSSAPFEGLVVSHQDRLLSNARLLHSAYTYIPPTRAPPIGAHCSDRNFSYKKIEDLHDPWVKRLFVGFARTSDCNGPRKPGHHHLHHLIQEIDSDIPVSQPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRILLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVKDFQQRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTRDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKLKEIPLQVKDRQKRKPSMKGIRVNEDGDASLEDLTNSAAQSTTDYDAFVDPEGQKSSNKKDYSLNMETYVLVLSILENIRYELPCGL 1472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02286 1472 ProSiteProfiles DBINO domain profile. 357 482 IPR020838 GO:0003677
Car04g02286 1472 MobiDBLite consensus disorder prediction 1394 1414 - -
Car04g02286 1472 CDD SF2_C_SNF 1201 1333 - -
Car04g02286 1472 MobiDBLite consensus disorder prediction 109 143 - -
Car04g02286 1472 SMART ultradead3 588 783 IPR014001 -
Car04g02286 1472 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 604 775 IPR014001 -
Car04g02286 1472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 822 1393 IPR027417 -
Car04g02286 1472 Coils Coil 429 468 - -
Car04g02286 1472 MobiDBLite consensus disorder prediction 1394 1416 - -
Car04g02286 1472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 575 820 IPR027417 -
Car04g02286 1472 MobiDBLite consensus disorder prediction 119 140 - -
Car04g02286 1472 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1213 1397 IPR001650 -
Car04g02286 1472 MobiDBLite consensus disorder prediction 30 61 - -
Car04g02286 1472 PANTHER CHROMATIN-REMODELING ATPASE INO80 17 1443 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Car04g02286 1472 PANTHER HELICASE SRCAP-RELATED 17 1443 - -
Car04g02286 1472 Pfam DNA-binding domain 353 480 IPR020838 GO:0003677
Car04g02286 1472 Gene3D - 1179 1431 IPR027417 -
Car04g02286 1472 Pfam Helicase conserved C-terminal domain 1213 1322 IPR001650 -
Car04g02286 1472 Pfam SNF2-related domain 607 894 IPR000330 GO:0005524|GO:0140658
Car04g02286 1472 SMART helicmild6 1239 1322 IPR001650 -
Car04g02286 1472 Gene3D - 565 845 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02286 Car-Chr4 34121698 34135900 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02286 613 903 RAD5 or RAD16-like Gene Family AT5G43530 28.571 1.08e-25 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car04g02286 SNF2_N 1.7e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02286 K11665 - gmx:100780615 2373.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g02286 04 34121698 34135900 Car04g02286 04 34121698 34135900 ECH