Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02281 ATGAAGCGTTTTTGTCATTCTTTTCACAAAACAGAGAAGCATGATGATTATGTATGGCCGCTGCTTGCACACGAGATGAAAAAGAATGGATCAAGAATCTTCATTTGTGATTTGTGCGACAAATCTTTCAGCTCCGGCAACGCCCTTGGTGGCCACAAAGCATCCCACAACCGCTCCGACCTTCTTCAACCTCCAATCAAGAAACACAAACTCACCATCGATTCTTGCTCTTTATCTTCTCCTAATGATCATGATGATGTCAAACACAAACATGCATGTGTTCTATGTCACAAAGTTTTTCCATCAAACAAAGCTTTGTATGGCCACATGCGATCGCACTCTCAAAAAGATTCAAAGGCTATTCAACCGCCACTAATAACAACAACATCCCGTGATTCCAAGATACAGAGTAATAATACTGATGATCAACCAATACTACCAGCTATTGATCTAGAGAAATATTTTCCGCCAAGATCGCATCAAACGAAGAAACGATGCAGTAAAAGTACAATTGATTATGAACTTATTAATGTTGCTCAAATACTCTGCGATATGTCTCGCAGTGACCCTACAAAATTTACAACCAATATCGATAATCAAAGGAACAAGGAACATGTGACAATAGTGAAAAATAATAACAACCCAAAGAAATTAGTGGTGACATTCAAGATTCCTAAAGACAAGACATTCAAGATTCCTAAAGACAAGGAAGAGAAGAACAAGGAAGCTGAAATGGAAAAGGAATCAAGTCATCAATTGGGGTCAAGAGCAGTTGCTAAAGATTTTGATTTGAATGAGATACCAGTTGATCTTGATCTTGTTGCAGATGAACAAGCACCctag 843 0.382 MKRFCHSFHKTEKHDDYVWPLLAHEMKKNGSRIFICDLCDKSFSSGNALGGHKASHNRSDLLQPPIKKHKLTIDSCSLSSPNDHDDVKHKHACVLCHKVFPSNKALYGHMRSHSQKDSKAIQPPLITTTSRDSKIQSNNTDDQPILPAIDLEKYFPPRSHQTKKRCSKSTIDYELINVAQILCDMSRSDPTKFTTNIDNQRNKEHVTIVKNNNNPKKLVVTFKIPKDKTFKIPKDKEEKNKEAEMEKESSHQLGSRAVAKDFDLNEIPVDLDLVADEQAP 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02281 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Car04g02281 280 Pfam C2H2-type zinc finger 34 57 - -
Car04g02281 280 Pfam C2H2-type zinc finger 91 115 - -
Car04g02281 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Car04g02281 280 SUPERFAMILY beta-beta-alpha zinc fingers 30 59 IPR036236 -
Car04g02281 280 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 29 144 IPR044653 GO:0003700
Car04g02281 280 SMART c2h2final6 34 56 IPR013087 -
Car04g02281 280 SMART c2h2final6 91 113 IPR013087 -
Car04g02281 280 SUPERFAMILY beta-beta-alpha zinc fingers 89 116 IPR036236 -
Car04g02281 280 MobiDBLite consensus disorder prediction 231 257 - -
Car04g02281 280 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Car04g02281 280 MobiDBLite consensus disorder prediction 231 254 - -
Car04g02281 280 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Car04g02281 280 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 29 144 - -
Car04g02281 280 Gene3D Classic Zinc Finger 33 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02281 Car-Chr4 33746600 33747523 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02281 31 151 C2H2 Transcription Factor Family AT2G28710 33.871 4.26e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g02281 zf-C2H2_6 6.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02281 - - cam:101497742 561.222