Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02278 ATGGAGGGTTTTCTGAAGGATTTTGAATTGGAAGACAAGGATCGTTCAATTGAAGCTCTGAGTAGATGGAGATCAGCAGTTTCATTGGTCAAGAACCCTCGAAGGAGATTTCGGAACGTAGCGGATCTCGTCAAACGCGCTCGACAAGAGGAAAAACAGAAGAAAATTCAGGGTAAGTTTCGGGCTGTTATCAACGTTCAACGAGCAGCACTGCATTTTACGGATGCTATTGGTACACCTGAATTCAAGGTATCAGAAAAGACAAGAGAAGCTGGTTTTGGTATCGAACCGGATGATATTGCATCAATTGTTCGAAGCCATGATTACAAGAACTATACGAAAATTGGTGAAGTTCAAGGGATTACAAGTAAACTTTCAGTCTCAGTTGATGAAGGTGTCAGTCAAGACAAAATACATAGTAGGCAAGAGATTTACGGGCTCAACCGATATACTGAGAAACCGTCTAAAAGCTTTCTGATGTTTGTTTGGGATGCACTGCATGACTTAACACTAATCATTCTCATGATTTGTGCATTAGTTTCTATAGGCATAGGGCTTCCCACTGAAGGGTGGCCAAAGGGTGTTTATGATGGTGTTGGAATCCTTCTTAGTATACTCTTGGTAGTCACTGTTACTGCTATCAGTGACTACCAGCAATCTCTGCAGTTCATAGATTTGGACAAAGAGAAGAAAAAGATATCTGTTCAGGTTACTAGGGATGGTAAAAGACAGAAGGTATCAATTTATGACTTGGTTGTAGGAGATATAGTTCATTTGTCAACTGGTGATCAAGTTCCAGCTGATGGAATTTTTATATCAGGATATTCGTTGTTAATCGATGAATCGAGTTTGTCAGGTGAGAGCGAACCTGTAAATATAGACGGTCGAAGACCTTTTCTTCTTTCGGGAACAAAAGTGCAAGATGGTCAGGGGAAGATGATAGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAGTTAATGGAAACTTTGAGTGAGGGAGGAGAGGATGAGACTCCATTGCAGGTGAAATTGAATGGAGTTGCTACAGTTATTGGTAAAATCGGTTTGACTTTTGCTGTGCTGACATTTGTGGTGTTGACAGTAAGGTTTGTGATTGAAAAAGCAGTTGATGGAGACTTCAGTAATTGGTCTTCAGAGGATGCACTGAAGCTACTAGACTACTTTGCTATTGCTGTAACCATAATAGTTGTTGCAATTCCTGAAGGATTACCATTAGCTGTAACACTAAGTCTTGCTTTTGCAATGAAAAAGTTAATGAATGATAGGGCGCTTGTGAGACATCTTTCTGCATGCGAGACTATGGGTTCAGCTAGTTGCATTTGCACCGATAAGACAGGAACGTTGACGACCAACCATATGGTTGTCGATAAAATTTGGATATGCGAAAAGACCATGGAGATGAAAGGCGATGAGAGTACTGATAAACTAAAAACAGAGATATCTGAAGAAGTTCTAAGCATCCTTTTGCAGGCTATATTTCAAAATACTTCGTCCGAAGTAGTTAAAGACAAAGAAGGAAAGCAGACAATATTGGGAACACCAACAGAATCGGCAATACTGGAATTTGGCTTGGTTTCAGGCGGTGATTTTGGTGCACAGCGTAGATCTTGTAAGATACTTAAGGTTGAGCCGTTCAATTCAGACAGGAAGAAGATGTCTGTGATTGTAGGTCTTCCTGATGGAGGCGTCAGAGCTTTCTGCAAAGGCGCATCGGAAATAGTGTTAAAAATGTGTGATAAAATCATCGATAGTAATGGAACTACTGTTGATCTTCCTGAAGAGCAGGCAAAGAATGTGACTGACATTATAAATGGCTTTGCCTCTGAAGCCTTGAGAACTCTTTGTTTGGCTGTCAAAGATATAGATGAAACACATGGGGAAACCGTCATACCTGAAACTGGATATACTCTGATCGCCATTGTTGGAATCAAGGATCCTGTGCGCCCTGGAGTTAAGGAAGCTGTTCAAAGTTGTTTAGCAGCTGGAATAACCGTCCGCATGGTTACTGGCGATAACATACATACAGCTAAGGCTATAGCTAAAGAATGTGGTATACTTACTGAGGGTGGTGTAGCCATAGAAGGACCAGCATTTCGCAATTTGTCTCCAGAAGAAATGAAGGATATCATACCAAGAATTCAGGTAATGGCAAGATCCTTACCGCTTGACAAGCATACCTTGGTGACCCGTTTGAGGAATATGTTTGGTGAGGTTGTGGCTGTTACCGGTGATGGAACCAATGATGCTCCTGCGCTGCACGAGTCAGACATTGGACTCGCCATGGGCATTGCTGGAACCGAGGTTGCCAAAGAAAATGCTGATGTCATTATAATGGATGACAACTTCACTACTATAGTCAAAGTGGCCAAATGGGGAAGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATGTTGTTGCTCTGATTACTAACTTTGTTTCTGCATGCATCACTGGAGCTGCTCCACTAACAGCTGTTCAGTTGCTTTGGGTTAACTTGATTATGGACACTCTTGGTGCATTGGCCCTTGCTACTGAACCTCCTAATGATGGACTTATGGAAAGAAAACCAGTTGGAAGGAAAGCAAGTTTTATTACCAAACCAATGTGGAGGAATATTTTTGGTCAAAGTTTGTATCAACTAATTGTCCTTGCAGTTCTCAATTTTGATGGCAAGAGGTTACTGGGACTAAGTGGCTCAGATGCAACTGCTGTGCTCAACACTTTGATTTTCAACTCCTTTGTATTTTGCCAGGTGTTCAATGAGATAAACAGCAGAGAAATTGAAAAGATAAACATATTCAAAGGCATATTTGACAGCTGGATATTTTTAAGTGTTATTCTCTCCACAGCAGTATTTCAAGTAATCATTGTTGAGTTCTTGGGAACATTTGCAAGCACAGTGCCTCTAACATGGCAATTCTGGTTACTCAGTGTGTTATTTGGTGCACTTAGCATGCCTATTGCTGCTATCCTCAAGTGCATTCCAGTTGAAAGAGATACCACAAACACAAAGCATCATGATGGTTATGAAGCACTCCCTTCTGGTCCTGACCTGGCATAA 3105 0.4113 MEGFLKDFELEDKDRSIEALSRWRSAVSLVKNPRRRFRNVADLVKRARQEEKQKKIQGKFRAVINVQRAALHFTDAIGTPEFKVSEKTREAGFGIEPDDIASIVRSHDYKNYTKIGEVQGITSKLSVSVDEGVSQDKIHSRQEIYGLNRYTEKPSKSFLMFVWDALHDLTLIILMICALVSIGIGLPTEGWPKGVYDGVGILLSILLVVTVTAISDYQQSLQFIDLDKEKKKISVQVTRDGKRQKVSIYDLVVGDIVHLSTGDQVPADGIFISGYSLLIDESSLSGESEPVNIDGRRPFLLSGTKVQDGQGKMIVTTVGMRTEWGKLMETLSEGGEDETPLQVKLNGVATVIGKIGLTFAVLTFVVLTVRFVIEKAVDGDFSNWSSEDALKLLDYFAIAVTIIVVAIPEGLPLAVTLSLAFAMKKLMNDRALVRHLSACETMGSASCICTDKTGTLTTNHMVVDKIWICEKTMEMKGDESTDKLKTEISEEVLSILLQAIFQNTSSEVVKDKEGKQTILGTPTESAILEFGLVSGGDFGAQRRSCKILKVEPFNSDRKKMSVIVGLPDGGVRAFCKGASEIVLKMCDKIIDSNGTTVDLPEEQAKNVTDIINGFASEALRTLCLAVKDIDETHGETVIPETGYTLIAIVGIKDPVRPGVKEAVQSCLAAGITVRMVTGDNIHTAKAIAKECGILTEGGVAIEGPAFRNLSPEEMKDIIPRIQVMARSLPLDKHTLVTRLRNMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFTTIVKVAKWGRAIYINIQKFVQFQLTVNVVALITNFVSACITGAAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMERKPVGRKASFITKPMWRNIFGQSLYQLIVLAVLNFDGKRLLGLSGSDATAVLNTLIFNSFVFCQVFNEINSREIEKINIFKGIFDSWIFLSVILSTAVFQVIIVEFLGTFASTVPLTWQFWLLSVLFGALSMPIAAILKCIPVERDTTNTKHHDGYEALPSGPDLA 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02278 1034 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 108 1012 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Car04g02278 1034 PRINTS H+-transporting ATPase (proton pump) signature 607 625 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car04g02278 1034 PRINTS H+-transporting ATPase (proton pump) signature 750 766 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car04g02278 1034 PRINTS H+-transporting ATPase (proton pump) signature 782 807 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car04g02278 1034 PANTHER CATION TRANSPORTING ATPASE 7 1018 - -
Car04g02278 1034 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 715 838 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car04g02278 1034 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 201 371 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car04g02278 1034 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 390 472 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car04g02278 1034 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 546 695 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Car04g02278 1034 CDD P-type_ATPase_Ca_PMCA-like 141 883 - -
Car04g02278 1034 SUPERFAMILY HAD-like 448 855 IPR036412 -
Car04g02278 1034 Pfam Cation transport ATPase (P-type) 505 589 - -
Car04g02278 1034 SFLD p-type atpase 431 803 IPR044492 -
Car04g02278 1034 Pfam E1-E2 ATPase 232 427 - -
Car04g02278 1034 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 48 IPR024750 GO:0005516
Car04g02278 1034 Pfam Cation transporting ATPase, C-terminus 835 1008 IPR006068 -
Car04g02278 1034 SUPERFAMILY Calcium ATPase, transduction domain A 234 330 IPR008250 -
Car04g02278 1034 SFLD C1.7: P-type atpase like 431 803 - -
Car04g02278 1034 ProSitePatterns E1-E2 ATPases phosphorylation site. 451 457 IPR018303 -
Car04g02278 1034 SMART Cation_ATPase_N_a_2 117 186 IPR004014 -
Car04g02278 1034 PANTHER CALCIUM-TRANSPORTING ATPASE 7 1018 - -
Car04g02278 1034 Gene3D - 15 76 - -
Car04g02278 1034 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 455 659 IPR023299 GO:0000166
Car04g02278 1034 Gene3D - 164 1009 - -
Car04g02278 1034 Gene3D - 446 795 IPR023214 -
Car04g02278 1034 Gene3D - 132 332 - -
Car04g02278 1034 Pfam Cation transporter/ATPase, N-terminus 116 181 IPR004014 -
Car04g02278 1034 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 1011 IPR023298 -
Car04g02278 1034 PRINTS P-type cation-transporting ATPase superfamily signature 280 294 - -
Car04g02278 1034 PRINTS P-type cation-transporting ATPase superfamily signature 449 463 - -
Car04g02278 1034 PRINTS P-type cation-transporting ATPase superfamily signature 647 658 - -
Car04g02278 1034 PRINTS P-type cation-transporting ATPase superfamily signature 669 679 - -
Car04g02278 1034 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Car04g02278 1034 PRINTS P-type cation-transporting ATPase superfamily signature 774 786 - -
Car04g02278 1034 Gene3D - 459 654 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02278 Car-Chr4 33657019 33662955 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02278 59 1031 Primary Pumps ATPases AT3G57330 73.819 0.0 1493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02278 K01537 - gmx:100791934 1677.92