Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02275 ATGGGGAGAGGGAAGATTGAGATCAAAAAGATTGAAAATTTGAATAGTAGACAAGTTACATTTTCAAAGAGAAGAAATGGGTTGCTTAAGAAAGCAAAAGAGTTGTCTATTCTTTGTGATGCAGAGGTTGCTGTTATTATATTTTCTGGCACTGGAAAACTTTATGAATTTTCAAGCACAAGCATGGAGCACATCTTTTCAAGGTACGGCAGAGGCCTTAATTCGAATGGAGCAGAGCAACAACCCAGTGATCAGCCTCCAGCAGAAGTTGTGGAGCATGATAGTGATACTACACTACTGCAAGAAGAAATAACCAAACTTCGTTCTGATTACTTAAGGATGACAGGAAAGGAGCTTGATGGATTGGACCTTAAAGAATTGCAGTACCTAGAAAATCAATTGTGTGAAGGGATATTAGCTGTCAAAAACAAAAAGGAACAAGTGCTTTTAGAACAGCTTAAGAGATCCAGGTTACAGGAGCAAAAGGCTATGATGGAGAATGAAGCTCTACGCAAACAACTTGAGGAGATAGAAAAGAAAAGAAAGGCAGAGTTCCTTGAATTTCATTCGTTGGATAGGACAATTATTTCGATGAACGGTTCAAAACCCCTTTCAAATTTTTGTTCAGAGGATAATGAGATTTCAGATACTTGCTTGCAGTTAGGGTTGTCATCAGATTATGGTCGCAAGAGGAAAGCATTGAAGATAGAACCTTGCAACGACTCAGGAAGTCAAGTGGCTTCACAGTGA 750 0.3893 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSILCDAEVAVIIFSGTGKLYEFSSTSMEHIFSRYGRGLNSNGAEQQPSDQPPAEVVEHDSDTTLLQEEITKLRSDYLRMTGKELDGLDLKELQYLENQLCEGILAVKNKKEQVLLEQLKRSRLQEQKAMMENEALRKQLEEIEKKRKAEFLEFHSLDRTIISMNGSKPLSNFCSEDNEISDTCLQLGLSSDYGRKRKALKIEPCNDSGSQVASQ 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02275 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 237 - -
Car04g02275 249 CDD MADS_MEF2_like 2 69 IPR033896 GO:0000977|GO:0045944
Car04g02275 249 SUPERFAMILY SRF-like 2 71 IPR036879 GO:0003677|GO:0046983
Car04g02275 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car04g02275 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car04g02275 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car04g02275 249 PANTHER BNAC04G24260D PROTEIN 1 237 - -
Car04g02275 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car04g02275 249 Pfam K-box region 96 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car04g02275 249 Coils Coil 153 187 - -
Car04g02275 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car04g02275 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car04g02275 249 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Car04g02275 249 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car04g02275 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02275 Car-Chr4 33320238 33323786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02275 1 231 MADS-box Gene Family AT5G13790 46.809 2.95e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car04g02275 K-box 4.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02275 - - gmx:100792278 363.229