Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02260 ATGAGGAAGAAGAATCCTTCACCTTCTTCTACTTATCATTCCCGTGTTGATAAAGAGAAAACAAATAGTTCAAGTATGCTGCACAAATGTAATTTGTGTGACAAAACGTTTAGGTCCAGAAAAGCACTCGGTGGTCACAAAACATCGCACCGCTCTAAGCTTTTTCAACCTCCAATCAAGAAACACGGTGGTGGTACCAATTATGATGATGTGAAACAGAAACATATATGTCTTTTTTGTGATAAGGTTTTTCCATCAAACAAAGCTTTGTATGGACACATGAGATTGCACTCTAATAGGAATGATACTTATGAGATCAACAAATACTATTAG 333 0.3634 MRKKNPSPSSTYHSRVDKEKTNSSSMLHKCNLCDKTFRSRKALGGHKTSHRSKLFQPPIKKHGGGTNYDDVKQKHICLFCDKVFPSNKALYGHMRLHSNRNDTYEINKYY 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02260 110 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Car04g02260 110 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Car04g02260 110 SMART c2h2final6 75 97 IPR013087 -
Car04g02260 110 SMART c2h2final6 28 50 IPR013087 -
Car04g02260 110 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Car04g02260 110 Gene3D Classic Zinc Finger 26 97 - -
Car04g02260 110 MobiDBLite consensus disorder prediction 1 23 - -
Car04g02260 110 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 50 IPR013087 -
Car04g02260 110 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 6 98 IPR044653 GO:0003700
Car04g02260 110 MobiDBLite consensus disorder prediction 43 67 - -
Car04g02260 110 SUPERFAMILY beta-beta-alpha zinc fingers 73 101 IPR036236 -
Car04g02260 110 MobiDBLite consensus disorder prediction 43 57 - -
Car04g02260 110 Pfam C2H2-type zinc finger 75 97 - -
Car04g02260 110 Pfam C2H2-type zinc finger 28 53 - -
Car04g02260 110 SUPERFAMILY beta-beta-alpha zinc fingers 26 53 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02260 Car-Chr4 32800596 32800928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02260 26 102 C2H2 Transcription Factor Family AT1G27730 40.449 2.45e-14 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g02260 zf-C2H2_6 6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02260 - - cam:105852858 202.216