Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02259 ATGCTGCACAAATGTAATTTGTGTGACAAAACGTTCAGCTCCGGAAAAGCACTCGGTGGTCACAAAACATCGCACCGCTCTAAGCTCGTTCAACCTCCAATCAAGAAACACGCTGGTGGTAACAATTATGATGATGTGAAACAGGAACATATATGTCTTTTTTGTGATAAGGTTTTTCCATCAAACAAAGCTTTGTATGGGCACATGATATTGCACTCTAATAGGAATGATACTTATGACGATCAACAAATACTATCAGCTGCTGACTTATCCAAATATTCTTCGCCAATATCCTATGAAACGAAGAAACAATGCGGTAAAAGTATAATTGATTATGAAGCTACTAATGCCGCTCAAATACTATGTGAAATATCTCACGCTGACCCTGAAATGTTGAAACTTTCAACCAATATCATTAATCAAATTAACAACAAACTAGTGACGACAGTGAAAGATAAAACAAGTCATTAG 471 0.3652 MLHKCNLCDKTFSSGKALGGHKTSHRSKLVQPPIKKHAGGNNYDDVKQEHICLFCDKVFPSNKALYGHMILHSNRNDTYDDQQILSAADLSKYSSPISYETKKQCGKSIIDYEATNAAQILCEISHADPEMLKLSTNIINQINNKLVTTVKDKTSH 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02259 156 ProSiteProfiles Zinc finger C2H2 type domain profile. 3 30 IPR013087 -
Car04g02259 156 SUPERFAMILY beta-beta-alpha zinc fingers 3 72 IPR036236 -
Car04g02259 156 Pfam C2H2-type zinc finger 3 28 - -
Car04g02259 156 Pfam C2H2-type zinc finger 50 72 - -
Car04g02259 156 ProSitePatterns Zinc finger C2H2 type domain signature. 5 25 IPR013087 -
Car04g02259 156 SMART c2h2final6 50 72 IPR013087 -
Car04g02259 156 SMART c2h2final6 3 25 IPR013087 -
Car04g02259 156 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Car04g02259 156 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Car04g02259 156 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 3 86 IPR044653 GO:0003700
Car04g02259 156 Gene3D Classic Zinc Finger 2 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02259 Car-Chr4 32771941 32772411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02259 1 84 C2H2 Transcription Factor Family AT1G27730 36.458 4.09e-13 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g02259 zf-C2H2_6 0.00025 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02259 - - cam:105852858 259.225