Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02258 ATGAGGAAGAAGAATCCTTCACCATCTTCTACTTATCATTCCCGTGTTGATAATGAGAAAACAAATAGTTCAAGTATGCTGCACAAATGTAATTTGTGTGACAAAACGTTCAGCTCTGGAAAAGCACTCGGTGGTCACAAAACATCGCACCGCTCTAAGCTCGTTCAACCTCCAATCAAGAAACACGCTGGTGGTAACAATTATGATGATGTGAAACAGGAACATATATGTCTTTTTTGTGATAAGGTTTTTCCATCGAACAAAGCTTTGTATGGACACATGATATTGCACTCTAATAGGAATGATACTTGTGACAATCAACAAATACTATCAGCTGCTGACTTATCCAAATATTCTTCGCCAATATCCTATGAAACGAAGAAACAATGCGGTAAAAGTATAATTGATTATAAAGCTATTAATGCCGCTCAAATACTATGTGAAATATCTCACGCTGACCCTGAAATGTTGAAACTTTCAACCAATATCATTAATCAAATTAACAACAAACTAGTGACGACAGTGAAAGATAATAACAAGTCATTAGTGGTCAGATTCAAGTTTCCTAAAGACAAGAAAATCTTTCAAACACATCATAAAGATCGCAACTGA 612 0.3546 MRKKNPSPSSTYHSRVDNEKTNSSSMLHKCNLCDKTFSSGKALGGHKTSHRSKLVQPPIKKHAGGNNYDDVKQEHICLFCDKVFPSNKALYGHMILHSNRNDTCDNQQILSAADLSKYSSPISYETKKQCGKSIIDYKAINAAQILCEISHADPEMLKLSTNIINQINNKLVTTVKDNNKSLVVRFKFPKDKKIFQTHHKDRN 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02258 203 SMART c2h2final6 75 97 IPR013087 -
Car04g02258 203 SMART c2h2final6 28 50 IPR013087 -
Car04g02258 203 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Car04g02258 203 SUPERFAMILY beta-beta-alpha zinc fingers 73 101 IPR036236 -
Car04g02258 203 SUPERFAMILY beta-beta-alpha zinc fingers 26 52 IPR036236 -
Car04g02258 203 Gene3D Classic Zinc Finger 26 97 - -
Car04g02258 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Car04g02258 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Car04g02258 203 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Car04g02258 203 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 7 106 IPR044653 GO:0003700
Car04g02258 203 MobiDBLite consensus disorder prediction 7 23 - -
Car04g02258 203 MobiDBLite consensus disorder prediction 1 23 - -
Car04g02258 203 Pfam C2H2-type zinc finger 28 53 - -
Car04g02258 203 Pfam C2H2-type zinc finger 75 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02258 Car-Chr4 32764343 32764954 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02258 26 109 C2H2 Transcription Factor Family AT1G27730 36.458 6.32e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g02258 zf-C2H2_6 0.00036 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02258 - - cam:105852858 348.591