Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02257 ATGCTGCACAAATGTAATTTGTGTGACAAAAAGTTCAGCTCTGGAAAAGCACTCGGTAGTCACAAAACATCCTACCACTCTAAGCTCCTTCAACGTCCAATCAAGAAACACGGTGGTGGTAACAATTATGATGATGTGAAACAGAAGCATATATGTCTTTTTTGTGATAAGGTTTTTCCATCAAACAAAGCTTTGTATCGACACATGATATTGCACTCTAATAGGAATGATACTTATGACGATCAACAAATACTATCAGCTGCTGACTTATCCAAATATTCTTCGCCAATATCCTATGAAACCAAGAAACAATGCGGTAAAATTATAATTGATTATGAAGCTGTGAATGCCGCTCAAATACTATGTGAAATGTCTCGCGCGGATCTTGAAATGTTGAATCTTTCAACTGATATCGATAATCAAATTAACAAGAAACTAGTGACGACAATGAAAGATAATAACAAGTCATTAGTGGTCAGATTCAAGTTTCCTAAAGACCAAAAGATCTTTCAAACACATCATGAAGATTGCAACTGA 537 0.3538 MLHKCNLCDKKFSSGKALGSHKTSYHSKLLQRPIKKHGGGNNYDDVKQKHICLFCDKVFPSNKALYRHMILHSNRNDTYDDQQILSAADLSKYSSPISYETKKQCGKIIIDYEAVNAAQILCEMSRADLEMLNLSTDIDNQINKKLVTTMKDNNKSLVVRFKFPKDQKIFQTHHEDCN 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02257 178 Pfam C2H2-type zinc finger 3 27 - -
Car04g02257 178 Gene3D Classic Zinc Finger 2 72 - -
Car04g02257 178 Pfam C2H2-type zinc finger 50 72 - -
Car04g02257 178 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 3 86 IPR044653 GO:0003700
Car04g02257 178 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Car04g02257 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Car04g02257 178 SUPERFAMILY beta-beta-alpha zinc fingers 3 72 IPR036236 -
Car04g02257 178 SMART c2h2final6 50 72 IPR013087 -
Car04g02257 178 SMART c2h2final6 3 26 IPR013087 -
Car04g02257 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 3 27 IPR013087 -
Car04g02257 178 ProSitePatterns Zinc finger C2H2 type domain signature. 5 26 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02257 Car-Chr4 32762126 32762662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02257 1 84 C2H2 Transcription Factor Family AT1G27730 32.292 2.70e-09 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g02257 zf-C2H2_6 8.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02257 - K09228 cam:105852858 314.309