Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02256 ATGAGGAAGAAGAATCATTCACCTTCTTCTACTTATCATTCCCGTGTTGATAATGAGAAAACAAATAGTTCAAGTATGCTGCACAAATGTAATTCGTGTGACAAAAAGTTCAGCTCCGGAAAACCACTCGGTGGTCACAAAAGATCGCACCGCTCTAAGCTCCTTCAACCTCCAATCAAGAAACACGGTGGTGGTAACCATTATGACGATGTGAAACACAAACATATATGTCTTTTTTGTGATAAGATTTTTCCATTAAACAAAGCTTTGTATGGACACATGAGATTGCACTCTAATAGGAATGATACTTATGACGATCAACAAATACTATCAGCTGTTCGCTTATCCAAATATTTGCCACCAAGATCCCGAGAAACGAAGAAACGATGCGGTCAAAGTATAATTGATTATGAAGCTATTAATGCCGCTCAAATACTATGTGAAATGTCTCGCGCTGATCCTGAAATGTTGAATCTTTCAACCGATATCGATAATCAAATTAACAAGAAACTAGTGACGACAATGAAAGATAATAACAAGTCATTAGTGGTCAGATTCAAGTTTCCTAAAGACAAGAAGATCTTTCAAACACATCATGAAGATTGCAACTGA 612 0.3676 MRKKNHSPSSTYHSRVDNEKTNSSSMLHKCNSCDKKFSSGKPLGGHKRSHRSKLLQPPIKKHGGGNHYDDVKHKHICLFCDKIFPLNKALYGHMRLHSNRNDTYDDQQILSAVRLSKYLPPRSRETKKRCGQSIIDYEAINAAQILCEMSRADPEMLNLSTDIDNQINKKLVTTMKDNNKSLVVRFKFPKDKKIFQTHHEDCN 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02256 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Car04g02256 203 PANTHER ZINC FINGER PROTEIN ZAT5 15 120 - -
Car04g02256 203 MobiDBLite consensus disorder prediction 42 57 - -
Car04g02256 203 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Car04g02256 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Car04g02256 203 Pfam C2H2-type zinc finger 28 53 - -
Car04g02256 203 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Car04g02256 203 SUPERFAMILY beta-beta-alpha zinc fingers 28 97 IPR036236 -
Car04g02256 203 Gene3D Classic Zinc Finger 26 97 - -
Car04g02256 203 MobiDBLite consensus disorder prediction 1 26 - -
Car04g02256 203 PANTHER OS03G0279700 PROTEIN 15 120 - -
Car04g02256 203 MobiDBLite consensus disorder prediction 11 26 - -
Car04g02256 203 MobiDBLite consensus disorder prediction 38 67 - -
Car04g02256 203 SMART c2h2final6 28 50 IPR013087 -
Car04g02256 203 SMART c2h2final6 75 97 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02256 Car-Chr4 32755987 32756598 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02256 26 109 C2H2 Transcription Factor Family AT1G27730 35.417 6.59e-11 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g02256 zf-C2H2_6 1.3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02256 - - cam:105852858 385.571