Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02255 ATGCTGCAGAAATGTAATTTGTGTGACAAAAAGTTCAACTCCGGAAAAGCACTCGGTGGTCACAAAACATTGCACCGCTCTAAGCTCCTTCAACCTCCAATCAAGAAACACGGTGGTGGTAACAATTATGATGATGTGAAACACAAACATATATGTCTTTTTTGTGATAAGATTTTTCCATCAAACAAAGCTTTGTATGGACACATGAGATTGCACTCTAATAGGAATGATACTTATGACGATCAACAAATACTATCAGTTGTTCACTTATCCAAATATTCGCCGCCAAGATCCCGTGAAACAAAGAAACGATGCGGTCAAAGTATAATTGATTATGAAGCTATTAATGCCGCTCATATACTACGTGAAATGTCTCGCGCTGATCCTGAAATGTTAAATCTTTCAACCGATATCGATAATCAAATTAACAAGAAACTAGTGACGACAACGAAAGATAATAACAAGTCATTAGTGGTCAGATTCAAGTTTCCTAAAGACAAGAAGATATTTCAAACACATCATGAAGATTGCAACTGA 537 0.3631 MLQKCNLCDKKFNSGKALGGHKTLHRSKLLQPPIKKHGGGNNYDDVKHKHICLFCDKIFPSNKALYGHMRLHSNRNDTYDDQQILSVVHLSKYSPPRSRETKKRCGQSIIDYEAINAAHILREMSRADPEMLNLSTDIDNQINKKLVTTTKDNNKSLVVRFKFPKDKKIFQTHHEDCN 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02255 178 Gene3D Classic Zinc Finger 3 72 - -
Car04g02255 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Car04g02255 178 ProSitePatterns Zinc finger C2H2 type domain signature. 5 25 IPR013087 -
Car04g02255 178 Pfam C2H2-type zinc finger 50 72 - -
Car04g02255 178 Pfam C2H2-type zinc finger 4 27 - -
Car04g02255 178 SUPERFAMILY beta-beta-alpha zinc fingers 4 72 IPR036236 -
Car04g02255 178 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Car04g02255 178 SMART c2h2final6 50 72 IPR013087 -
Car04g02255 178 SMART c2h2final6 3 25 IPR013087 -
Car04g02255 178 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 4 98 IPR044653 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02255 Car-Chr4 32744107 32744643 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02255 4 84 C2H2 Transcription Factor Family AT1G27730 36.559 1.93e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g02255 zf-C2H2_6 0.0037 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02255 - - cam:105852858 375.17