Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02241 ATGGGTGGTCATCAAGTAATCAATTCCTCTTTTTGGAGCTTTGTTTTAGTTGTTGTGATAGTAACATTCTTCACTACAATTGTTAGTTCTTCCAAACAATCTCAAATAGAAGGCATGAAAATGAATGTGATTGATCAATGTTGGAGATTTAATCCAGAATGGAGGAAACATCGTCAACAACTTGCCAGATGCTCAGTTGGCTATGTAGGAAAAATGACAAGCAACATAGATAAAGACCTTGTTCATTATAAAGTTACTGATCCTAGTGATCACCCCTTAAACCCACAACCTGGAGCTTTGAGATATGGAGCTTCTAACATTCAAGGTAAAGTTTGGATCACATTCCAAAGTGACATGAACATTAGACTTGAGAAGCCCCTTCTTATTAGTAGTTTCACTACCATTGATGGTCGAGGTGTCAATGTCCACATCGCTAATAATGCATGCTTGATGATCTATAAGGCAACAAACATAATTATCCATGGAATTAGGATTCATCATTGTCGACCTCAAGCTCCCGGAATGGTGATGGGTCCCAATGGAAAGATAATGTCGTTGGGTCAAGTGGATGGAGATGCAATTAGATTGGTTTCTGCTTCAAAGATTTGGATTGATCATAACACACTTTATGATAGCCAAGATGGTCTTCTTGATGTTACGCGAGGTTCTACTGATGTGACAATCTCCAACAATTGGTTTAGGGAGCAAGATAAGGTTATGCTTCTTGGACACGATGATGGATTCGTAAGAGACAAGAACATGAAAGTAACTGTCGTATACAACTATTTTGGGCCTAATTGCCGCCAACGCATGCCTAGAATTCGTCACGGATATGCACATGTTGCAAACAATCTCTACATGGGATGGACGCAATATGCAATTGGTGGAAGCAGCGGACCAAGCCTTAAAAGTCAATCAAACCTCTTCATAGCACCAACAGAAAATAAGGAGGTGACATGGAGAAAAAGTAGTAATGGAATTGAAGATACGTGGAAATTTTATTCAGTTGGAGACGCCTTTGAAAATGGTGCATCCTTCATAGATACAAAAGGTGAACAGGTGAAAAAACCCAATTATAGCCCTGAACAGGATTTTGAAGTTGTTGATTCCAAATATGTGAGATCATTGACAAGTTCCTCGGGAGTGTTACAGTGTAGTAAATCTTCAATATGTTAA 1176 0.3895 MGGHQVINSSFWSFVLVVVIVTFFTTIVSSSKQSQIEGMKMNVIDQCWRFNPEWRKHRQQLARCSVGYVGKMTSNIDKDLVHYKVTDPSDHPLNPQPGALRYGASNIQGKVWITFQSDMNIRLEKPLLISSFTTIDGRGVNVHIANNACLMIYKATNIIIHGIRIHHCRPQAPGMVMGPNGKIMSLGQVDGDAIRLVSASKIWIDHNTLYDSQDGLLDVTRGSTDVTISNNWFREQDKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCRQRMPRIRHGYAHVANNLYMGWTQYAIGGSSGPSLKSQSNLFIAPTENKEVTWRKSSNGIEDTWKFYSVGDAFENGASFIDTKGEQVKKPNYSPEQDFEVVDSKYVRSLTSSSGVLQCSKSSIC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02241 391 PANTHER PECTATE LYASE 13 388 - -
Car04g02241 391 PANTHER PECTATE LYASE 18-RELATED 13 388 IPR045032 GO:0030570
Car04g02241 391 PRINTS Pollen allergen Amb family signature 89 114 IPR018082 -
Car04g02241 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Car04g02241 391 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Car04g02241 391 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Car04g02241 391 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Car04g02241 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Car04g02241 391 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Car04g02241 391 SMART amb_all 118 315 IPR002022 -
Car04g02241 391 SUPERFAMILY Pectin lyase-like 82 350 IPR011050 -
Car04g02241 391 Gene3D - 41 384 IPR012334 -
Car04g02241 391 Pfam Pectate lyase 128 309 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02241 Car-Chr4 32385023 32389038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02241 72 318 Polysaccharide Lyase AT5G09280 69.355 4.00e-134 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02241 K01728 - gmx:100811216 639.417