Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02240 atGGGAACTCCGGAATTCCCAGATCTGGGAAAACACTGTGCTGTTTCCGATTGCAAACTCATTGATTTCTTGCCCTTCACTTGCGATCGCTGCAACCAGGTGTATTGTTTGGAACACCGAAGTTTTATCAAACATCAGTGTACAAAAGCTGACAAGCAAGACGTGACTGTAGTAATATGTCCACTTTGCGCCAAAGGAGTTCGCCTAATACCTGATCAAGATCCAAACATAACATGGGAGAATCATGTTAACACTGAGTGCGACCCATCAAATTATGAGAAAGTTACAAAGAAGAAAAAATGCCCTGCCGCTGGATGCAAAGAGATTTTAGTTTTCTCAAACACAATTAAGTGCAGGGATTGCAATGTAGAACATTGTTTGAAGCATAGGTTTGGACCTGATCACAAATGTCCAGGGCCTAAAAAATTGGAAACTACTTTCTCCTTTATGAATCTAATGAATAAGAACAGAAAACAGGAGTCGAAAACCAAATCAAGTTCAACGACCTCCTCCTCCTCATCTAACTGGACTACGAGCTTTCTTAATGCGGCTTCTAATATTCGAGCTTCAGCAGAGGCAGGAATGTCAAAGTTGAGTGGTGAAATTAACCAAGCATGGGGGACATCTAGCAACGGTGCGGGGAAAAGCAATGGCAGTGGTCAAGTTGAGCAATGTCCTCAATGTGGTGCCAAGTTTTCCTCGGTCACTACTTTAGTCGATCATGTACAGAAATCTCATGAAAGAAGTGGCAACCGATCCGGGCCGAAAGTTACGATTGATGTGTGTCCTAAGTGTAGTAAAGGATTCAGAGACCCTGTGGCCCTTGTGGAGCATGTTGAGAGGGATCATGGTGGAACTTCTAGAGCATAG 870 0.4333 MGTPEFPDLGKHCAVSDCKLIDFLPFTCDRCNQVYCLEHRSFIKHQCTKADKQDVTVVICPLCAKGVRLIPDQDPNITWENHVNTECDPSNYEKVTKKKKCPAAGCKEILVFSNTIKCRDCNVEHCLKHRFGPDHKCPGPKKLETTFSFMNLMNKNRKQESKTKSSSTTSSSSSNWTTSFLNAASNIRASAEAGMSKLSGEINQAWGTSSNGAGKSNGSGQVEQCPQCGAKFSSVTTLVDHVQKSHERSGNRSGPKVTIDVCPKCSKGFRDPVALVEHVERDHGGTSRA 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02240 289 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Car04g02240 289 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Car04g02240 289 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 289 - -
Car04g02240 289 Gene3D Classic Zinc Finger 197 286 - -
Car04g02240 289 SMART c2h2final6 223 246 IPR013087 -
Car04g02240 289 SMART c2h2final6 260 283 IPR013087 -
Car04g02240 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 288 IPR013087 -
Car04g02240 289 MobiDBLite consensus disorder prediction 155 176 - -
Car04g02240 289 ProSitePatterns Zinc finger C2H2 type domain signature. 262 283 IPR013087 -
Car04g02240 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 251 IPR013087 -
Car04g02240 289 SUPERFAMILY beta-beta-alpha zinc fingers 224 279 IPR036236 -
Car04g02240 289 Gene3D - 80 173 IPR035896 -
Car04g02240 289 SUPERFAMILY AN1-like Zinc finger 93 146 IPR035896 -
Car04g02240 289 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Car04g02240 289 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Car04g02240 289 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Car04g02240 289 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Car04g02240 289 Pfam C2H2-type zinc finger 224 246 - -
Car04g02240 289 ProSitePatterns Zinc finger C2H2 type domain signature. 225 246 IPR013087 -
Car04g02240 289 Gene3D - 2 60 IPR035896 -
Car04g02240 289 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Car04g02240 289 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02240 Car-Chr4 32333998 32337589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02240 1 289 C2H2 Transcription Factor Family AT2G41835 62.976 1.63e-128 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g02240 zf-AN1 3.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02240 - - gmx:100786272 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02112 03 67363896 67365535 Car04g02240 04 32333998 32337589 PCT