Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02236 ATGGAGAAAATGGCACTCACTTTTCAAAACTCTTCATTCTTCACCACCACAACACTTCCCAAGACTTCTTCTTCTCCACTCTTTTTCTCTAAGCGTAACAAACGCTTTGCACTTCCCTTATCTTCTTCCAAATCACTGCTTCGATTCGCTACCAGGAACATTAAGCCGATTAAATGTTCAATTTCTGAAGTTACTGAGCCTAAAACAGaaaagaagaaattgatgagaagagaagaTGTTAGGAATATTGCAATTGTTGCTCATGTTGATCATGGAAAAACAACTCTCGTTGATGCCATGCTTAGACAAACTAAGGTGTTTCGTGATAATCAATTTGTACAAGAAAGGATAATGGATTCTAATGATTTGGAGCGTGAAAGAGGAATCACTATATTGAGTAAAAATACATCCGTGACTTACAAAGATGCCAAGATTAATATAATTGATACTCCAGGTCACTCTGATTTTGGTGGTGAAGTTGAACGCATCTTGAATATGGTGGAAGGAATCCTTCTAGTGGTAGATTCTGTTGAAGGGCCAATGCCACAGACAAGATTTGTCTTAAAAAAGGCTTTAGAGTTTGGCCATGCGGTTGTTGTGGTTGTGAACAAAATAGACAGGCCTTCTGCTCGCCCTGATTTTGTCGTCAACTCTACTTTTGAGCTCTTCATTGAACTAAATGCAACAGATGAACAGTGTGACTTTCAGGTAATATATGCAAGTGGAATAAAAGGGAAAGCAGGGTTGTCTCCTGAAGATCTGGCTGATGACCTTGGACCATTGTTTGAATCCATCATCAGATGTATTCCTGGACCACGTATCGATAAAGATGGCTCACTCCAAATGCTTGTTACAAGTACTGAGTTTGAAGGACATAAAGGGCGTATAGCAATTGGGCGCTTGGAAGCTGGAGTTTTAGAAAAAGGCATGGAAGTCAAGGTATGTACGTCAGAAGATTCATGTAGATATGCAAGGGTTAGTGAGCTTTATGTGTACGAAAAATTCATTAGGGTCCCTGCTGAAAGGGTGGAGGCTGGAGATATTTGTGCAGTGTGTGGAATTTCTGATATTCAGATTGGGGAGACAATTGCGGATAAACTGACTGGAAAGCCATTACCTTCTATCAAAGTGGAAGAACCAACAGTGAAAATGTCTTTCTCCATAAACACTTCGCCTTTTGTCGGTCGTGAGGGAAAGTATGTTACCAGTAGGAATTTAAGGGACAGGCTTTATCGTGAACTTGAGAGAAATCTGGCTATGAAGGTTGAAGATGGTGAAACAGCTGATACATTCGTTGTCAGTGGGCGTGGAACTTTGCATATCACTATACTCATTGAAAATATGCGAAGGGAAGGATTTGAGTTCATGGTTGGGCCTCCCAAAGTTATCAACAAGAAGGTGAATGATAAAGTGTTGGAGCCATATGAGATTGCAACTGTCGAGGTACCGGAAGTGCACATGGGAGCAGTTGTTGAACTTCTTGGCAAGAGACGAGGGCAAATGTTTGATATGCAAGGAGTTGGATCGGAGGGAACTACACTACTCAAATATAAGATCCCAACCCGTGGCCTTCTTGGATTGCGGAATGCAATTTTAACTGCTTCCCGAGGGACAGCTATTCTCAACACTGTCTTTGAATGTTATGGACCTTGGGCGGGCGACATGAGTACTCGAGATCTAGGCTCATTGGTTGCTTTTGAGGATGGAACAAGTACTTCTTATGCAATCGCTAGTTCACAGGAGAGGGGGCATATGTTTATCGGTCCTGGAGCAGAAGTTTATAAAGGTCAAATTATTGGCATCCATCAACGCGCTGGGGACTTGTCCTTGAATGTTTGCAAGAAAAAAGCTGCAACCAATATACGTTCTAACAAGGAACAGTCAGTGATTCTTGATACACCATTGGATTATAGTTTGGATGACTGCATTGAATACATTCAAGAAGATGAACTAGTAGAGGTCACCCCTCAAAGTATAAGAATGTGTAAGAATCCAAAACTTGCAAAGAAAGGAAGGTAG 2019 0.4086 MEKMALTFQNSSFFTTTTLPKTSSSPLFFSKRNKRFALPLSSSKSLLRFATRNIKPIKCSISEVTEPKTEKKKLMRREDVRNIAIVAHVDHGKTTLVDAMLRQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVTYKDAKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDFVVNSTFELFIELNATDEQCDFQVIYASGIKGKAGLSPEDLADDLGPLFESIIRCIPGPRIDKDGSLQMLVTSTEFEGHKGRIAIGRLEAGVLEKGMEVKVCTSEDSCRYARVSELYVYEKFIRVPAERVEAGDICAVCGISDIQIGETIADKLTGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFVVSGRGTLHITILIENMRREGFEFMVGPPKVINKKVNDKVLEPYEIATVEVPEVHMGAVVELLGKRRGQMFDMQGVGSEGTTLLKYKIPTRGLLGLRNAILTASRGTAILNTVFECYGPWAGDMSTRDLGSLVAFEDGTSTSYAIASSQERGHMFIGPGAEVYKGQIIGIHQRAGDLSLNVCKKKAATNIRSNKEQSVILDTPLDYSLDDCIEYIQEDELVEVTPQSIRMCKNPKLAKKGR 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02236 672 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 80 667 IPR006298 GO:0005525
Car04g02236 672 Gene3D - 77 273 IPR027417 -
Car04g02236 672 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 119 134 IPR031157 -
Car04g02236 672 CDD BipA_III 380 458 - -
Car04g02236 672 CDD TypA_BipA 79 272 - -
Car04g02236 672 SMART EFG_C_a 470 559 IPR000640 -
Car04g02236 672 Pfam Elongation factor Tu domain 2 294 363 IPR004161 GO:0005525
Car04g02236 672 CDD BipA_TypA_II 280 373 - -
Car04g02236 672 Gene3D - 464 557 - -
Car04g02236 672 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 55 672 - -
Car04g02236 672 SUPERFAMILY EF-G C-terminal domain-like 378 462 IPR035647 -
Car04g02236 672 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 78 273 IPR000795 GO:0003924|GO:0005525
Car04g02236 672 CDD BipA_TypA_C 473 552 IPR035651 -
Car04g02236 672 Pfam Elongation factor G C-terminus 471 555 IPR000640 -
Car04g02236 672 TIGRFAM small_GTP: small GTP-binding protein domain 81 229 IPR005225 GO:0005525
Car04g02236 672 SUPERFAMILY Translation proteins 226 373 IPR009000 -
Car04g02236 672 Pfam Elongation factor Tu GTP binding domain 79 270 IPR000795 GO:0003924|GO:0005525
Car04g02236 672 Gene3D Elongation Factor G (Translational Gtpase), domain 3 381 664 - -
Car04g02236 672 Gene3D bipa protein 558 637 IPR042116 -
Car04g02236 672 PANTHER BNAC09G43450D PROTEIN 55 672 - -
Car04g02236 672 SUPERFAMILY EF-G C-terminal domain-like 473 587 IPR035647 -
Car04g02236 672 Gene3D Translation factors 274 374 - -
Car04g02236 672 PRINTS GTP-binding elongation factor signature 82 95 IPR000795 GO:0003924|GO:0005525
Car04g02236 672 PRINTS GTP-binding elongation factor signature 126 134 IPR000795 GO:0003924|GO:0005525
Car04g02236 672 PRINTS GTP-binding elongation factor signature 146 156 IPR000795 GO:0003924|GO:0005525
Car04g02236 672 PRINTS GTP-binding elongation factor signature 198 207 IPR000795 GO:0003924|GO:0005525
Car04g02236 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 281 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02236 Car-Chr4 32025487 32031793 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02236 80 207 Eukaryotic Initiation Factors Gene Family AT3G22980 44.615 9.25e-24 105