Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02211 ATGGCAGACCCTTACTCTAATTTCTTCTCTTCTAATTTCTTCCACCAATTCAATAATAATCCCTCAcaccatcaccattacccttcttctaaccctcaccaccaccctaattatctccaCAATTTCATCAACCACACAACAACTTTCAACACTACCAACACTTTTTTCCACTATCATCATCTTCAAACTACAACTCCTTCTTATTCTTCACCTCCTTCCCCTCCTCTAAAAGAAGCTCTTCCACTTATGAGTCTAATTCCTACAAAGCAACAGGAATACTTAGATGATGAATCTTGCAGTTTAATGGATGTAGAGGATTTCAGCCATAAATTTGAGGAAATTAAAGATGATGAAAAAAGTGATGAAGGTGTGACTGTTGCACTACACATAGGGTTACCAAGCCCTAGTGCTGCTGAGATGGCAACTATGATGAACATGTCTTCTTCTTCATCTGAGATTATGAATGAAAGAGAAGATGTAATAAGTGAAGATTCTTCAAATACTAATGGTTTCTTAAGTTGTAATAGACTCAACAAAGGTCAATATTGGATCCCTACACCTTCTCAGATTCTCATTGGTCCTACACAGTTCTCTTGTCCTGTTTGCTTCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGTCCAGAATCTCTAAGAGGAACACAACCAACAGGTATGCTAAGGCTACCATGCTATTGTTGTTCACCAGGTTGCAGGAACAACATTGATCATCCAAGAGCAAAGCCTCTAAAAGATTTCAGAACACTTCAAACACATTACAAGAGGAAACATGGAATCAAGCCATTCATGTGTAGGAAATGTGGTAAGGCTTTTGCTGTTAGAGGGGATTGGAGAACTCATGAGAAGAATTGTGGAAAGCTTTGGTATTGTCTTTGTAGATCTGATTTTAAGCATAAGAGGTCCCTTAAAGATCATATAAGAGCTTTTGGAAGTGGTCATGCTGCTTATGGGGTTGATGGTTTTGAAGAAGATGATGAACCTGCATCTGAAGTTGAACAGGATAATGATTCAACTCAGTAG 1077 0.363 MADPYSNFFSSNFFHQFNNNPSHHHHYPSSNPHHHPNYLHNFINHTTTFNTTNTFFHYHHLQTTTPSYSSPPSPPLKEALPLMSLIPTKQQEYLDDESCSLMDVEDFSHKFEEIKDDEKSDEGVTVALHIGLPSPSAAEMATMMNMSSSSSEIMNEREDVISEDSSNTNGFLSCNRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCLCRSDFKHKRSLKDHIRAFGSGHAAYGVDGFEEDDEPASEVEQDNDSTQ 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02211 358 SUPERFAMILY beta-beta-alpha zinc fingers 263 301 IPR036236 -
Car04g02211 358 SUPERFAMILY beta-beta-alpha zinc fingers 173 219 IPR036236 -
Car04g02211 358 MobiDBLite consensus disorder prediction 338 358 - -
Car04g02211 358 Gene3D Classic Zinc Finger 259 335 - -
Car04g02211 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 281 301 IPR013087 -
Car04g02211 358 PANTHER ZINC FINGER PROTEIN WIP2 1 358 IPR043584 GO:0003700|GO:0010468
Car04g02211 358 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
Car04g02211 358 Gene3D Classic Zinc Finger 196 219 - -
Car04g02211 358 MobiDBLite consensus disorder prediction 340 358 - -
Car04g02211 358 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 358 - -
Car04g02211 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 224 IPR013087 -
Car04g02211 358 SMART c2h2final6 281 301 IPR013087 -
Car04g02211 358 SMART c2h2final6 197 219 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02211 Car-Chr4 31010999 31014326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02211 1 355 C2H2 Transcription Factor Family AT3G57670 62.211 1.07e-148 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g02211 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02211 - - gmx:100802907 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02129 03 67526349 67528983 Car04g02211 04 31010999 31014326 PCT