Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02210 ATGTTTTTCTTTTACCTCGCGCTCCATTTTCTCTTTCTGAAATTACCCCGCGTTTTATTTCACTATCTGAAATTGTTCTCGTGCTCGCTCCAAAACTATTTTCCCCCAAAACTTACAAATTATTTCTCCAAAACCTCATCAACCAATGATGCCAACATCTTAGCTGTGAACATTCCGGATTTGAAGGGAAAACCAAAGGAACAATCTTTCGAACAAGATTTGCTCGACATGCTGGAAAAGCTACAACAATTGCGTCTCGAGAAAGAGAAAACCGATGAGCTCTTGAAAGCCAAAGACGAGATCTTGAAACAAAAGGATGAAGAACTTCAAAATAGTGGCAAGGAGCAAGAAAACCTTCAGATTGAGTTTAAGAAATTACAGAAATTGAAGGAATTCAAACCCACCACGAATTTTCCTATGGTGAAAGACAAGGAACAAAAAAAGAAGGACAGGAAGGGTGCCCTGACGTGGTATTTACCTCATTTCAATGTAAATTATGAAGATCCTCATTTCAATGTTGGTTTGCTTGTATTTACCATTCATGTAAATTATGAAGATCCTCATTTCAATGTTGGTTTGCTTGTATTTACCATTCATGGAAATTATGACGATCCGACTGACGTGAAGAGCAACAAGACCAAGAAAGAGAAGGATCCATTGAAACCAAAGCATCCTATGTCAGCTTATTTCTTGTATACTAATGATAGGAGAGTTTCTATTCTTGCAGAGAACAAAGGTGTCTTAGAGGTTTCTACTGTCACATTTGAAGAGTGGAAAAACATGACAGAAAAACAAAAGAGACCCTATGAAGAGATGGCACATAAAAAAGAAGAGGAAGCTGCAAATCCCATGAAGGAAGAGAAAGAGCATATGAAATTTCAGAAACATGAAACCTTGCAATTGCTCAAGAAAAATTAA 918 0.3715 MFFFYLALHFLFLKLPRVLFHYLKLFSCSLQNYFPPKLTNYFSKTSSTNDANILAVNIPDLKGKPKEQSFEQDLLDMLEKLQQLRLEKEKTDELLKAKDEILKQKDEELQNSGKEQENLQIEFKKLQKLKEFKPTTNFPMVKDKEQKKKDRKGALTWYLPHFNVNYEDPHFNVGLLVFTIHVNYEDPHFNVGLLVFTIHGNYDDPTDVKSNKTKKEKDPLKPKHPMSAYFLYTNDRRVSILAENKGVLEVSTVTFEEWKNMTEKQKRPYEEMAHKKEEEAANPMKEEKEHMKFQKHETLQLLKKN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02210 305 Pfam HMG-box domain 220 285 IPR009071 -
Car04g02210 305 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 62 152 IPR044601 GO:0003677
Car04g02210 305 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 207 304 IPR044601 GO:0003677
Car04g02210 305 Coils Coil 67 129 - -
Car04g02210 305 SUPERFAMILY HMG-box 208 279 IPR036910 -
Car04g02210 305 Gene3D High mobility group box domain 206 299 IPR036910 -
Car04g02210 305 MobiDBLite consensus disorder prediction 264 305 - -
Car04g02210 305 SMART hmgende2 221 289 IPR009071 -
Car04g02210 305 CDD HMGB-UBF_HMG-box 222 279 - -
Car04g02210 305 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 222 288 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02210 Car-Chr4 30928676 30931073 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Car04g02210 HMG_box_2 7.1e-11 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02210 K09273 - cam:101513574 290.041