Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02183 ATGGCGTTTATTGAGGGAAACAACCTTGCAACCATACCGAACAACCGCAAAAGAAAGTTTGAAAACAAGAAAGTGGAAGATGAGGAGCACAAATCTCAACTTTCCTTCACAAAACGTAAATTAGGGCTTTTCAATAAAGTCACTGAACTTTCCGTCCTATGCCATGCCAAAACTGCATTGATCATCACTTCAAAAGATAAAAAACTCTATGCATGTGGCTACCCTAACGTCGACACCGTCCTTCGACACTTTCTCGAAGGACAACAAAATCCCATCGACGGCGAGAAACAGATGATGCAAAAAGAGGAAGAGACTGTTGAAAACCTAAGGGTTGAATATGAGGTACTTCAAGATCAACTTAAAGAAGAGAAGAAGAATTTGCAAGTTGTGACTGAGGCACAAAAGAACAGTGCATGTATCCCTTCTTGGTGGGATGATTCTATTGATGATATGAGTTTGGAATCTCTTCAGCTATTTAAGACTTCTTTAGAAAATCTGAAGCTCAATTTAATTCTTTCTTTGGACGAAAAAAGGATCCGTTCATCTTTTTCCACCACCACCACCAATAATCAAATTATTGGATTATAA 588 0.3844 MAFIEGNNLATIPNNRKRKFENKKVEDEEHKSQLSFTKRKLGLFNKVTELSVLCHAKTALIITSKDKKLYACGYPNVDTVLRHFLEGQQNPIDGEKQMMQKEEETVENLRVEYEVLQDQLKEEKKNLQVVTEAQKNSACIPSWWDDSIDDMSLESLQLFKTSLENLKLNLILSLDEKRIRSSFSTTTTNNQIIGL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02183 195 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 71 IPR002100 GO:0003677|GO:0046983
Car04g02183 195 SUPERFAMILY SRF-like 16 86 IPR036879 GO:0003677|GO:0046983
Car04g02183 195 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 12 182 - -
Car04g02183 195 SMART madsneu2 15 75 IPR002100 GO:0003677|GO:0046983
Car04g02183 195 Coils Coil 92 133 - -
Car04g02183 195 Gene3D - 28 112 IPR036879 GO:0003677|GO:0046983
Car04g02183 195 ProSiteProfiles MADS-box domain profile. 15 76 IPR002100 GO:0003677|GO:0046983
Car04g02183 195 PANTHER MADS BOX PROTEIN 12 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02183 Car-Chr4 30014203 30014790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02183 33 195 Type I MADS-box Gene Family AT5G60440 28.655 3.63e-24 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car04g02183 SRF-TF 6.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02183 - - cam:101507050 306.219