Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02176 ATGAGTTCATTAACAGTTTCAAAGATTGTAAACCACAAACGCCTCAAGAAGACGGCGTACACGGCGGCATCAACCACCTTTGTCACTACTTCTTCTTCTCCCGCCTCTTCCACCTCCAAGTCTTTCGTCAATCGTCAATTCGACTCCGATTCAAACTCCAACCACATCATCGAAGACGTTTCACATTTAAGACCTAGCTCAACTGGCGATACCGACATTCAACTGGCGATACCGACATTGTTAGGAGTGGAGGAGGGAGGGAGGATAAATGATGATGACAACAGGGAGTCTGTTCACCTAGTAGTGTTGCTGGCCCATATCAGGTTGCACTCATCACCTCACCTGCATGCGCGTCTTTCGAAGCCCATAGTGGCAATATTCACCATGAATGAATCAGCAGTAAACAGGCAAAGCAACAACGAAGAACAAGAAGATGACTACATGGGGGACCTTTCTCGGTTTCTTCCTTCTGATGCTATCGACCCTCCAAATCCGAAGTCTTCATCAAAAAGGATTTCGGACAAGAAAGATCTTTCAATCAACTCTTCCAAGAGTCAGTTGAAAACTTTTAACTGGCAAGAACGACGGAAAATCGAAAGAGAAAGAAAGCAAATACAAGAGGATGAACAAACATTAGCGAAAGTGGAAGCTCCAATACCACAATCCAACATTGGGTTTAAGCTACTCAAACAGATGGGTTATACTCCAGGTTCTGCCCTTGGAAAGCAAGGCTCGGGCAGGGCTGAACCAATTGGGATTGAAATTCGACGGTCACGAGCAGGTATAGGCTTAGAGGATCCCCACAAGGAGAAGAAGAAAATGGAGGAAATCATGATTGACAGGAAAAGGAGGAATGAGCAGGCTCTGATGCAAGAATTCGGGTCTAGGCAGAAGTCACGGTGGCAGAGTAGGAGAATTATTGTTAATTTCAACAAGGCTAAGGCTGCCCTTGACCAATTGGAGAATCGGGAAATTGTGGAGCCAGagaagaatgaggatgatgcagagggtgaagatgaagaagaagaagaaataacagaagaGGACTTGCTCGATGTTTTGATGAAACTGAGGGATGAGTTCAATTACTGCCTCTTCTGTGGATGCAAATATGAATCAAGTTCTGCCCTTTTAGTCAACTGCCCTGGAATCAATGAAGACGACCACTAA 1170 0.4299 MSSLTVSKIVNHKRLKKTAYTAASTTFVTTSSSPASSTSKSFVNRQFDSDSNSNHIIEDVSHLRPSSTGDTDIQLAIPTLLGVEEGGRINDDDNRESVHLVVLLAHIRLHSSPHLHARLSKPIVAIFTMNESAVNRQSNNEEQEDDYMGDLSRFLPSDAIDPPNPKSSSKRISDKKDLSINSSKSQLKTFNWQERRKIERERKQIQEDEQTLAKVEAPIPQSNIGFKLLKQMGYTPGSALGKQGSGRAEPIGIEIRRSRAGIGLEDPHKEKKKMEEIMIDRKRRNEQALMQEFGSRQKSRWQSRRIIVNFNKAKAALDQLENREIVEPEKNEDDAEGEDEEEEEITEEDLLDVLMKLRDEFNYCLFCGCKYESSSALLVNCPGINEDDH 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02176 389 MobiDBLite consensus disorder prediction 152 185 - -
Car04g02176 389 ProSiteProfiles G-patch domain profile. 221 267 IPR000467 GO:0003676
Car04g02176 389 PANTHER UNCHARACTERIZED 143 389 IPR039249 -
Car04g02176 389 MobiDBLite consensus disorder prediction 331 346 - -
Car04g02176 389 MobiDBLite consensus disorder prediction 321 346 - -
Car04g02176 389 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 11 143 389 - -
Car04g02176 389 Pfam Domain of unknown function (DUF4187) 338 389 IPR025239 -
Car04g02176 389 Pfam G-patch domain 221 264 IPR000467 GO:0003676
Car04g02176 389 SMART G-patch_5 219 265 IPR000467 GO:0003676
Car04g02176 389 SMART DUF4187_2 335 389 IPR025239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02176 Car-Chr4 29708883 29715789 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02176 213 263 C2H2 Transcription Factor Family AT5G26610 47.059 6.04e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g02176 - - gmx:100806249 385.185