Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g02169 ATGAGTTCCCCTTCTTCACCACCTAGCTCCTCCAATGAGTTTCTTGATGGGTTGAAATTTGGTCAAAAAGTATACTTTGAAGCAAAACCAAATGGTGGGTCATCTTCATCTTCAGGGATAACAACAAAGAAGGGAAATCAACAACCACCTAGGTGTCAAGTTGAAGGCTGTAAAGTAGATCTAAGTGGTGCTAAGGCTTATTATTCTAGACACAAAGTTTGTTGCATGCATTCAAAATCTCCAATTGTTGTTGTCTCTGGTTTGGAACAGAGGTTTTGCCAACAGTGTAGCAGGTTTCATCAGCTTCCTGAATTTGATCAAGGAAAAAGAAGCTGCCGCAGGCGACTGGCTGACCATAATGAAAGGCGAAGAAAGCCACATCCAACTTCCTTGTTAACCTCGCATTTTACCAAACTCTCTCCATCTACTTTTGATAACAATAACAAAGGCAATGATTTTATGATGGAATGTGCTTCATATCCGAAGTTTTCTTCAAGTAATGCATTGGCAACTCAGACATCATATGAGCCAGTTTGTCGTGATCGAACCACACCGTTTACCTGGCAGAATAACACGGAGCCACCATCTGATTTTTTCCAGCAAGGTTCGGTTGGTGGAACAAATTTCCTCAGTCCTAGACATCCTCCAATGGAAAGCTACAATGAAGTTGCCGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAACCACACATGGGATTCTCGAAACACAACGCCGAGTGTTGAGATGAACAACTTGTTGAGTTTCAATGAGACGCTCATGTCACAATCTTCTCAAGGTGCAGCCAGTTATCAACTTTCAAATGCTTCTTGGTTTTTGAAGGGAATTGATTCCGGTAACTGTTCGGCCGAGGATGTACCTGATCTTGAGCTTGGTCAAAATTCACATACTCTTCATAGTAATCTTCCTGGTGAGCTTGATGTGTCACAAGACAAGAGGCATTACTGGTCACTTTAA 975 0.4215 MSSPSSPPSSSNEFLDGLKFGQKVYFEAKPNGGSSSSSGITTKKGNQQPPRCQVEGCKVDLSGAKAYYSRHKVCCMHSKSPIVVVSGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLADHNERRRKPHPTSLLTSHFTKLSPSTFDNNNKGNDFMMECASYPKFSSSNALATQTSYEPVCRDRTTPFTWQNNTEPPSDFFQQGSVGGTNFLSPRHPPMESYNEVADSSCALSLLSNHTWDSRNTTPSVEMNNLLSFNETLMSQSSQGAASYQLSNASWFLKGIDSGNCSAEDVPDLELGQNSHTLHSNLPGELDVSQDKRHYWSL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g02169 324 Gene3D - 42 113 IPR036893 GO:0003677|GO:0005634
Car04g02169 324 MobiDBLite consensus disorder prediction 29 49 - -
Car04g02169 324 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 3 321 - -
Car04g02169 324 SUPERFAMILY SBT domain 50 131 IPR036893 GO:0003677|GO:0005634
Car04g02169 324 MobiDBLite consensus disorder prediction 28 51 - -
Car04g02169 324 MobiDBLite consensus disorder prediction 118 143 - -
Car04g02169 324 Pfam SBP domain 52 125 IPR004333 GO:0003677
Car04g02169 324 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 3 321 IPR044817 GO:0003677
Car04g02169 324 ProSiteProfiles Zinc finger SBP-type profile. 49 126 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g02169 Car-Chr4 29614548 29620276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g02169 18 235 SBP-box Gene Family AT2G42200 51.724 4.87e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Car04g02169 SBP 6.4e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02160 03 67783792 67787452 Car04g02169 04 29614548 29620276 PCT